Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G043100.1 | Wheat | cytosol | 98.71 | 98.55 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 98.71 | 98.23 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 95.65 | 95.95 |
| Os03t0707600-01 | Rice | nucleus | 87.26 | 86.56 |
| Zm00001d033680_P001 | Maize | nucleus | 86.94 | 85.56 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 44.84 | 85.28 |
| EER93592 | Sorghum | cytosol | 85.81 | 84.85 |
| Zm00001d013465_P001 | Maize | cytosol | 84.52 | 83.84 |
| GSMUA_Achr10P... | Banana | cytosol | 56.45 | 73.22 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 53.87 | 69.73 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 52.58 | 63.06 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 52.42 | 62.98 |
| KRH58636 | Soybean | nucleus | 52.74 | 62.52 |
| AT1G14920.1 | Thale cress | nucleus | 51.77 | 60.23 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 52.74 | 58.81 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 54.68 | 57.46 |
| Bra024875.1-P | Field mustard | nucleus | 52.26 | 56.54 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 52.1 | 56.47 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 52.42 | 55.37 |
| CDY04092 | Canola | cytosol | 46.61 | 54.12 |
| CDY64837 | Canola | cytosol | 46.94 | 53.69 |
| Bra017443.1-P | Field mustard | cytosol | 46.61 | 52.83 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 34.68 | 42.91 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 26.61 | 37.84 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 24.84 | 34.45 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 26.45 | 34.02 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 23.23 | 30.13 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 19.03 | 30.1 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 21.61 | 29.78 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 24.84 | 29.67 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 24.68 | 29.59 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 20.16 | 29.34 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 18.87 | 27.21 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 22.9 | 26.05 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 25.81 | 25.93 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 29.84 | 25.87 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 20.32 | 25.66 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 19.52 | 25.21 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 17.74 | 24.66 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 21.77 | 24.32 |
| TraesCS5A01G144000.1 | Wheat | plastid | 25.16 | 24.07 |
| TraesCS4A01G430600.1 | Wheat | plastid | 23.71 | 23.67 |
| TraesCS7A01G059000.1 | Wheat | plastid | 23.23 | 22.97 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G271000.1 | EnsemblPlantsGene:TraesCS4A01G271000 | Gene3D:1.10.10.1290 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:DELLA_N_sf | InterPro:IPR005202 | InterPro:IPR038088 | InterPro:TF_DELLA | InterPro:TF_DELLA_N |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | PFAM:PF03514 | PFAM:PF12041 | PFscan:PS50985 |
| SEG:seg | SMART:SM01129 | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | : |
Description
No Description!
Coordinates
chr4A:-:582477716..582479578
Molecular Weight (calculated)
65188.8 Da
IEP (calculated)
4.749
GRAVY (calculated)
-0.127
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREYQDAGG SGGGGGMGSS EDKMMVSAAA GEGEEVDELL AALGYKVRAS DMADVAQKLE QLEMAMGMGG VGAGAAPDDS FATHLATDTV HYNPTDLSSW
101: VESMLSELNA PPPPLPPAPQ QLNASTSSTV TGGGYFDLPP SVDSSCSTYA LRPIPSPAGA VGPADLSADS VRDPKRMRTG GSSTSSSSSS SSSLGGGARS
201: SVVEAAPPVA AGANAPALPV VVVDTQEAGI RLVHALLACA EAVQQENFSA AEALVKQIPL LAASQGGAMR KVAAYFGEAL ARRVFRFRPQ PDSSLLDAAF
301: ADLLHAHFYE SCPYLKFAHF TANQAILEAF AGCRRVHVVD FGIKQGMQWP ALLQALALRP GGPPSFRLTG VGPPQPDETD ALQQVGWKLA QFAHTIRVDF
401: QYRGLVAATL ADLEPFMLQP EGEEDPNEEP EVIAVNSVFE MHRLLAQPGA LEKVLGTVRA VRPRIVTVVE QEANHNSGTF LDRFTESLHY YSTMFDSLEG
501: GSSGGPSEVS SGAAAAPAAA GTDQVMSEVY LGRQICNVVA CEGAERTERH ETLGQWRNRL GNAGFETVHL GSNAYKQAST LLALFAGGDG YKVEEKEGCL
601: TLGWHTRPLI ATSAWRLAAP
101: VESMLSELNA PPPPLPPAPQ QLNASTSSTV TGGGYFDLPP SVDSSCSTYA LRPIPSPAGA VGPADLSADS VRDPKRMRTG GSSTSSSSSS SSSLGGGARS
201: SVVEAAPPVA AGANAPALPV VVVDTQEAGI RLVHALLACA EAVQQENFSA AEALVKQIPL LAASQGGAMR KVAAYFGEAL ARRVFRFRPQ PDSSLLDAAF
301: ADLLHAHFYE SCPYLKFAHF TANQAILEAF AGCRRVHVVD FGIKQGMQWP ALLQALALRP GGPPSFRLTG VGPPQPDETD ALQQVGWKLA QFAHTIRVDF
401: QYRGLVAATL ADLEPFMLQP EGEEDPNEEP EVIAVNSVFE MHRLLAQPGA LEKVLGTVRA VRPRIVTVVE QEANHNSGTF LDRFTESLHY YSTMFDSLEG
501: GSSGGPSEVS SGAAAAPAAA GTDQVMSEVY LGRQICNVVA CEGAERTERH ETLGQWRNRL GNAGFETVHL GSNAYKQAST LLALFAGGDG YKVEEKEGCL
601: TLGWHTRPLI ATSAWRLAAP
001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
Arabidopsis Description
GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.