Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G431200.1 | Wheat | mitochondrion | 85.03 | 86.69 |
| TraesCS7D01G431300.1 | Wheat | mitochondrion | 84.39 | 84.66 |
| HORVU7Hr1G100520.1 | Barley | cytosol, mitochondrion | 81.21 | 83.06 |
| TraesCS7B01G340600.1 | Wheat | mitochondrion | 82.48 | 83.01 |
| TraesCS3D01G441300.1 | Wheat | mitochondrion | 71.97 | 77.93 |
| TraesCS3D01G441000.1 | Wheat | mitochondrion | 71.34 | 77.24 |
| HORVU7Hr1G100540.2 | Barley | mitochondrion | 74.52 | 76.97 |
| TraesCS4D01G018100.1 | Wheat | mitochondrion, nucleus | 71.02 | 73.6 |
| TraesCS6D01G073600.1 | Wheat | cytosol, nucleus, plastid | 48.09 | 55.72 |
| TraesCS6D01G110700.1 | Wheat | nucleus | 42.04 | 50.19 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 44.59 | 42.42 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 24.84 | 41.49 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 30.25 | 41.3 |
| EER91098 | Sorghum | nucleus | 45.86 | 40.56 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 30.25 | 39.42 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 30.57 | 38.87 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 29.94 | 38.52 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 34.39 | 37.76 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 34.08 | 35.91 |
| Zm00001d033419_P001 | Maize | plastid | 30.57 | 34.29 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 34.08 | 33.33 |
| CDY09318 | Canola | cytosol | 24.2 | 32.48 |
| CDX94520 | Canola | cytosol | 24.2 | 32.48 |
| CDY07541 | Canola | cytosol | 24.2 | 32.48 |
| CDY21311 | Canola | cytosol | 24.2 | 32.48 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 31.53 | 32.04 |
| Bra035092.1-P | Field mustard | nucleus | 32.17 | 31.96 |
| CDX87407 | Canola | nucleus | 32.17 | 31.96 |
| CDX88507 | Canola | nucleus | 28.98 | 30.54 |
| KRH43767 | Soybean | nucleus | 24.52 | 30.43 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 29.3 | 30.36 |
| PGSC0003DMT400062617 | Potato | nucleus | 28.66 | 30.0 |
| Solyc02g031710.2.1 | Tomato | nucleus | 28.98 | 29.35 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 29.94 | 29.1 |
| AT4G19700.1 | Thale cress | cytosol | 28.03 | 28.95 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 29.3 | 28.75 |
| CDY26402 | Canola | cytosol | 27.07 | 28.72 |
| Bra039533.1-P | Field mustard | cytosol, nucleus, plastid | 27.07 | 28.72 |
| KRG89416 | Soybean | nucleus | 28.66 | 28.66 |
| AT5G45100.1 | Thale cress | cytosol | 26.75 | 28.57 |
| KRH11729 | Soybean | nucleus | 28.34 | 28.43 |
| KRH36722 | Soybean | nucleus | 27.71 | 28.06 |
| CDY01615 | Canola | cytosol | 27.07 | 27.87 |
| CDY71607 | Canola | cytosol | 27.07 | 27.78 |
| Bra012532.1-P | Field mustard | nucleus | 27.07 | 27.78 |
| CDX79294 | Canola | nucleus | 26.75 | 27.63 |
| Bra013423.1-P | Field mustard | nucleus | 25.8 | 27.36 |
| CDY51918 | Canola | cytosol | 24.84 | 27.18 |
| AT3G12920.1 | Thale cress | nucleus | 28.98 | 27.16 |
| CDY71192 | Canola | cytosol | 24.2 | 27.14 |
| AT1G79110.1 | Thale cress | nucleus | 30.89 | 27.09 |
| KRH13682 | Soybean | nucleus | 28.98 | 27.0 |
| Bra034718.1-P | Field mustard | nucleus | 28.98 | 27.0 |
| Bra039354.1-P | Field mustard | cytosol | 27.71 | 26.77 |
| CDY43390 | Canola | cytosol | 27.71 | 26.77 |
| CDY24237 | Canola | nucleus | 27.07 | 26.23 |
| CDY13070 | Canola | cytosol | 23.25 | 26.16 |
| Bra027588.1-P | Field mustard | cytosol, nucleus, plastid | 23.25 | 26.16 |
| CDY64561 | Canola | nucleus | 28.03 | 25.88 |
| Bra001477.1-P | Field mustard | nucleus | 28.03 | 25.88 |
| CDX82568 | Canola | nucleus | 27.71 | 25.59 |
| Bra028364.1-P | Field mustard | cytosol, nucleus, plastid | 22.93 | 25.53 |
| CDY18062 | Canola | cytosol | 22.93 | 25.53 |
| CDY46345 | Canola | cytosol | 22.61 | 25.18 |
| Solyc02g069180.2.1 | Tomato | plastid | 22.61 | 25.09 |
| TraesCS2D01G288000.1 | Wheat | cytosol | 25.16 | 24.46 |
| TraesCS2D01G287900.1 | Wheat | cytosol | 23.57 | 23.12 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 22.61 | 22.12 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 22.93 | 21.56 |
| CDY23552 | Canola | cytosol | 13.38 | 19.35 |
| TraesCS4D01G215600.1 | Wheat | plastid | 16.88 | 15.63 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G431100.1 | EnsemblPlantsGene:TraesCS7D01G431100 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF12 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:550462993..550464022
Molecular Weight (calculated)
34079.7 Da
IEP (calculated)
6.867
GRAVY (calculated)
-0.344
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDLQRLRH MLLTTGDGGG HHQLSSAAAM PASGPCYGAA VSCERGHQPY ADLFTLPPPP TMTSAPYQCS EFLAMDAVDL AKKGGNPDGV QEMITKKRRR
101: EERSSMLSAA DALAAHAQQQ TIDVHRILLK HAQKMWTTLA EQRQSHTRLI VWTVEARAAK RLKAKDEDIE RIRSMNWALE ERLRNLLMEA QMWRDVAQSH
201: EATANVLRGD LQRALDSQAV RGGGSDDGQE DDAESCCWGE KQVPLCAEEE VGTPVVEERH ATGAGRCKGC REGAAVVLLL PCRHLCVCAP CAAAAQACPA
301: CGSAKNGIVC INFS
101: EERSSMLSAA DALAAHAQQQ TIDVHRILLK HAQKMWTTLA EQRQSHTRLI VWTVEARAAK RLKAKDEDIE RIRSMNWALE ERLRNLLMEA QMWRDVAQSH
201: EATANVLRGD LQRALDSQAV RGGGSDDGQE DDAESCCWGE KQVPLCAEEE VGTPVVEERH ATGAGRCKGC REGAAVVLLL PCRHLCVCAP CAAAAQACPA
301: CGSAKNGIVC INFS
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.