Factsheet for Bra035092.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87407	Canola	nucleus	99.37	99.37
CDX88507	Canola	nucleus	87.66	92.95
AT1G79110.1	Thale cress	nucleus	75.95	67.04
KRH43767	Soybean	nucleus	40.82	50.99
GSMUA_Achr7P00850_001	Banana	plastid	33.86	46.52
GSMUA_Achr4P23050_001	Banana	nucleus	27.53	46.28
VIT_19s0027g00740.t01	Wine grape	nucleus	44.62	45.63
Bra039354.1-P	Field mustard	cytosol	45.89	44.62
GSMUA_Achr5P02100_001	Banana	plastid	33.86	43.85
GSMUA_Achr2P13160_001	Banana	plastid	34.18	43.72
KRH13682	Soybean	nucleus	46.52	43.62
GSMUA_Achr4P32070_001	Banana	nucleus	38.61	42.66
Bra034718.1-P	Field mustard	nucleus	45.25	42.43
Bra001477.1-P	Field mustard	nucleus	44.62	41.47
GSMUA_Achr4P28300_001	Banana	nucleus	31.33	41.08
Bra013423.1-P	Field mustard	nucleus	37.66	40.2
GSMUA_Achr6P31690_001	Banana	nucleus	37.34	39.6
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	36.39	38.85
Bra012532.1-P	Field mustard	nucleus	37.34	38.56
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	32.28	36.56
GSMUA_Achr9P09830_001	Banana	nucleus	36.71	36.14
TraesCS3D01G441300.1	Wheat	mitochondrion	32.91	35.86
TraesCS7D01G431300.1	Wheat	mitochondrion	35.44	35.78
TraesCS3D01G441000.1	Wheat	mitochondrion	32.59	35.52
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	33.54	34.98
HORVU4Hr1G003180.3	Barley	mitochondrion	33.86	34.85
TraesCS3A01G448500.1	Wheat	mitochondrion	32.28	34.81
TraesCS3B01G484600.1	Wheat	cytosol	30.06	34.55
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	33.23	34.2
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	30.38	34.04
TraesCS4A01G293700.1	Wheat	mitochondrion	32.91	33.77
TraesCS4B01G019600.1	Wheat	mitochondrion	32.91	33.55
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	25.32	33.47
TraesCS7A01G442300.1	Wheat	mitochondrion	33.54	33.44
TraesCS7B01G340600.1	Wheat	mitochondrion	32.91	33.33
TraesCS7B01G340700.1	Wheat	mitochondrion	32.59	33.01
TraesCS7A01G442100.1	Wheat	mitochondrion	32.59	32.8
TraesCS7B01G340500.1	Wheat	mitochondrion	32.59	32.7
HORVU7Hr1G100540.2	Barley	mitochondrion	31.33	32.57
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	31.96	32.17
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	33.54	32.12
TraesCS7A01G441900.1	Wheat	mitochondrion	31.96	31.96
TraesCS7D01G431200.1	Wheat	mitochondrion	31.01	31.82
EER91098	Sorghum	nucleus	35.44	31.55
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	25.63	29.89
TraesCS6A01G120700.1	Wheat	nucleus	24.37	29.28
HORVU6Hr1G021960.1	Barley	plastid	24.05	29.12
HORVU6Hr1G021880.1	Barley	plastid	24.05	29.12
TraesCS6B01G149100.1	Wheat	nucleus	23.73	28.52
TraesCS6D01G110700.1	Wheat	nucleus	23.73	28.52
Zm00001d033419_P001	Maize	plastid	24.37	27.5
Bra040255.1-P	Field mustard	nucleus	19.3	26.64
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	18.35	26.24
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	19.3	25.96
Bra034672.1-P	Field mustard	cytosol	19.62	24.7
Bra024967.1-P	Field mustard	plastid	18.99	24.29
Bra017511.1-P	Field mustard	nucleus	23.1	24.17
Bra014051.1-P	Field mustard	nucleus	22.15	22.51
Bra019910.1-P	Field mustard	nucleus, plastid	19.94	20.72
Bra018428.1-P	Field mustard	nucleus	22.15	20.71
Bra031495.1-P	Field mustard	nucleus	21.2	20.49
Bra012650.1-P	Field mustard	nucleus	20.89	18.91
Bra022093.1-P	Field mustard	nucleus	10.13	14.55

Protein Annotations

EnsemblPlants:Bra035092.1	EnsemblPlants:Bra035092.1-P	EnsemblPlantsGene:Bra035092	Gene3D:3.30.40.10	GO:GO:0008150	GO:GO:0008219
GO:GO:0009987	GO:GO:0043067	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF7	PFAM:PF13920	PFscan:PS50089
PIRSF:PIRSF036836	SEG:seg	UniParc:UPI0002541CDC	UniProt:M4F1Z5	MapMan:35.1	:

Description

AT1G79110 (E=2e-090) | protein binding / zinc ion binding

Coordinates

chrA07:+:22123670..22124816

Molecular Weight (calculated)

35118.3 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.545

Length

316 amino acids

Sequence
(BLAST)

001: MAVDAHHLLL STPQLFSNRE LMMHNNNDNA TMEPTTNGGF CTNGYGVVSP FSATDDSPPP PLLHHMYGAS CTADSFANYY ADGANLQTRK RSRDSRSDYY
101: PHHQSTVSPS YVAPYSFLGQ DIDLSSHINQ QQHDIDRFVS LHMERVKFEI QEKRKRQART IVEAIEHGLA KRLRVKDEER ERIGKINHAL EERVKSLSIE
201: NQIWRDLAQS NEATANNLRA NLEEVLAQVK DITGAGLANC DDDAQSCCGS SSGEETVRRT VVAKGRMCRS CGEEESCVLV LPCRHLCLCG VCGSSVHTCP
301: ICRSPKNASV HVNMSP

Best Arabidopsis Sequence Match ( AT1G79110.2 )
(BLAST)

001: MAVDAHHLFL SPPQLFSNRE LTMNNNTMEP TSGGFCNNNQ TGYGVVSPFS VPNHTSTTTT ATPPLLHVYG GSDTIPTTAG YYADGATNLD CEFFPLPTRK
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHMERVKYE IEEKRKRQAR TIMEAIEQGL VKRLRVKEEE
201: RERIGKVNHA LEERVKSLSI ENQIWRDLAQ TNEATANHLR TNLEHVLAQV KDVSRGAGLE KNMNEEDDAE SCCGSSCGGG GEETVRRRVG LEREAQDKAE
301: RRRRRMCRNC GEEESCVLLL PCRHLCLCGV CGSSVHTCPI CTSPKNASVH VNMSS

Arabidopsis Description

BRG2Probable BOI-related E3 ubiquitin-protein ligase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDI6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.