Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G073600.1 | Wheat | cytosol, nucleus, plastid | 86.61 | 76.38 |
| TraesCS6A01G120700.1 | Wheat | nucleus | 58.16 | 52.85 |
| TraesCS3A01G448500.1 | Wheat | mitochondrion | 54.81 | 44.71 |
| TraesCS7A01G442100.1 | Wheat | mitochondrion | 57.74 | 43.95 |
| TraesCS7A01G441900.1 | Wheat | mitochondrion | 56.49 | 42.72 |
| TraesCS4A01G293700.1 | Wheat | mitochondrion | 54.81 | 42.53 |
| TraesCS7A01G442300.1 | Wheat | mitochondrion | 55.23 | 41.64 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 34.31 | 35.65 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 28.03 | 35.64 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 33.05 | 32.78 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 33.47 | 32.39 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 33.05 | 32.38 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 36.82 | 30.77 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 42.26 | 30.61 |
| KRH43767 | Soybean | nucleus | 32.22 | 30.43 |
| EER91098 | Sorghum | nucleus | 42.68 | 28.73 |
| CDY07541 | Canola | cytosol | 28.03 | 28.63 |
| CDY21311 | Canola | cytosol | 28.03 | 28.63 |
| CDY09318 | Canola | cytosol | 28.03 | 28.63 |
| CDX94520 | Canola | cytosol | 28.03 | 28.63 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 35.56 | 28.52 |
| CDX88507 | Canola | nucleus | 34.31 | 27.52 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 34.73 | 26.86 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 35.98 | 26.79 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 33.89 | 26.73 |
| KRH36722 | Soybean | nucleus | 33.89 | 26.13 |
| CDX79294 | Canola | nucleus | 32.64 | 25.66 |
| KRH11729 | Soybean | nucleus | 33.47 | 25.56 |
| Bra035092.1-P | Field mustard | nucleus | 33.47 | 25.32 |
| CDX87407 | Canola | nucleus | 33.47 | 25.32 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 33.89 | 25.31 |
| KRG89416 | Soybean | nucleus | 33.05 | 25.16 |
| PGSC0003DMT400062617 | Potato | nucleus | 31.38 | 25.0 |
| AT5G45100.1 | Thale cress | cytosol | 30.54 | 24.83 |
| AT4G19700.1 | Thale cress | cytosol | 31.38 | 24.67 |
| CDY26402 | Canola | cytosol | 30.54 | 24.66 |
| Bra039533.1-P | Field mustard | cytosol, nucleus, plastid | 30.54 | 24.66 |
| Solyc02g031710.2.1 | Tomato | nucleus | 31.38 | 24.19 |
| CDY51918 | Canola | cytosol | 28.87 | 24.04 |
| Bra013423.1-P | Field mustard | nucleus | 28.87 | 23.31 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 31.38 | 23.22 |
| CDY71192 | Canola | cytosol | 27.2 | 23.21 |
| CDY01615 | Canola | cytosol | 29.29 | 22.95 |
| AT1G79110.1 | Thale cress | nucleus | 34.31 | 22.91 |
| KRH13682 | Soybean | nucleus | 32.22 | 22.85 |
| Bra012532.1-P | Field mustard | nucleus | 28.87 | 22.55 |
| CDY71607 | Canola | cytosol | 28.87 | 22.55 |
| Bra028364.1-P | Field mustard | cytosol, nucleus, plastid | 26.36 | 22.34 |
| CDY18062 | Canola | cytosol | 26.36 | 22.34 |
| CDY13070 | Canola | cytosol | 25.94 | 22.22 |
| Bra027588.1-P | Field mustard | cytosol, nucleus, plastid | 25.94 | 22.22 |
| CDY24237 | Canola | nucleus | 29.71 | 21.91 |
| AT3G12920.1 | Thale cress | nucleus | 30.54 | 21.79 |
| Zm00001d033419_P001 | Maize | plastid | 25.52 | 21.79 |
| Bra034718.1-P | Field mustard | nucleus | 30.54 | 21.66 |
| CDY46345 | Canola | cytosol | 25.52 | 21.63 |
| CDY43390 | Canola | cytosol | 28.87 | 21.23 |
| Bra039354.1-P | Field mustard | cytosol | 28.87 | 21.23 |
| TraesCS2A01G290100.1 | Wheat | cytosol | 28.45 | 21.05 |
| TraesCS2A01G290000.1 | Wheat | cytosol | 28.45 | 20.99 |
| Bra001477.1-P | Field mustard | nucleus | 29.29 | 20.59 |
| CDX82568 | Canola | nucleus | 28.87 | 20.29 |
| CDY64561 | Canola | nucleus | 28.45 | 20.0 |
| Solyc02g069180.2.1 | Tomato | plastid | 23.01 | 19.43 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 24.27 | 17.9 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 23.85 | 16.76 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 24.27 | 16.52 |
| TraesCS4A01G089200.1 | Wheat | plastid | 21.34 | 15.04 |
| CDY23552 | Canola | cytosol | 11.72 | 12.9 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G079900.1 | EnsemblPlantsGene:TraesCS6A01G079900 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD |
| ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF12 | PIRSF:PIRSF036836 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr6A:-:49081857..49082673
Molecular Weight (calculated)
26391.6 Da
IEP (calculated)
6.603
GRAVY (calculated)
-0.447
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMSGPLPPP PLGLRLCGGQ EMATNKRTRH QQSSMLGAAQ AQQQPIVVDH NLRDHAEKVC TTSREQRQRH IGMMISTMVA RARKQLEAKE QEIEWIRSVN
101: WALKERIRNL HIEAQAWRNV AQSNETVANV LRADLQQVLE QQAVRGSGSN DSEDAAGSCW GEKHVAFCRE EQEEEEGETP GVEPRVTEVE MCKGCGQSAP
201: VVLLLPCRHL CVCAPCAEAA QVCPSCICVK TGSISINFS
101: WALKERIRNL HIEAQAWRNV AQSNETVANV LRADLQQVLE QQAVRGSGSN DSEDAAGSCW GEKHVAFCRE EQEEEEGETP GVEPRVTEVE MCKGCGQSAP
201: VVLLLPCRHL CVCAPCAEAA QVCPSCICVK TGSISINFS
001: MNNGQQIAGG GFPVTIGDRN LQYIDPINSF NKSESELTAI SKRQRDSTFD SDALIASQKR RAIAFSPASL IDAELVSQIQ QQNSEIDRFV AQQTETLRIE
101: LEARQRTQTR MLASAVQNAI LKKLKAKDEE IIRMGKLNWV LQERVKNLYV ENQIWRDLAQ TNEATANNLR SNLEQVLAQV DDLDAFRRPL VEEADDAESS
201: CGSCDGGDVT AVVNGGCKRC GELTASVLVL PCRHLCLCTV CGSSALLRTC PVCDMVMTAS VHVNMSS
101: LEARQRTQTR MLASAVQNAI LKKLKAKDEE IIRMGKLNWV LQERVKNLYV ENQIWRDLAQ TNEATANNLR SNLEQVLAQV DDLDAFRRPL VEEADDAESS
201: CGSCDGGDVT AVVNGGCKRC GELTASVLVL PCRHLCLCTV CGSSALLRTC PVCDMVMTAS VHVNMSS
Arabidopsis Description
BRG1BOI-related E3 ubiquitin-protein ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHE4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.