Factsheet for TraesCS2A01G290100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G288000.1	Wheat	cytosol	97.21	97.21
TraesCS2B01G306600.1	Wheat	cytosol	96.28	96.28
Os04t0402500-00	Rice	cytosol	58.82	60.13
TraesCS2A01G290000.1	Wheat	cytosol	59.44	59.26
EES12084	Sorghum	cytosol, nucleus, plastid	45.2	49.83
OQU81469	Sorghum	cytosol	51.7	49.55
Zm00001d025310_P001	Maize	cytosol	49.23	49.53
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	49.54	48.48
OQU81471	Sorghum	mitochondrion	49.85	42.59
GSMUA_Achr10P...	Banana	nucleus	34.06	34.59
GSMUA_Achr6P16260_001	Banana	nucleus	33.75	32.34
GSMUA_Achr6P08300_001	Banana	plastid	31.58	29.48
TraesCS3A01G448500.1	Wheat	mitochondrion	26.01	28.67
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	21.05	28.45
TraesCS4A01G293700.1	Wheat	mitochondrion	24.77	25.97
TraesCS1A01G215300.1	Wheat	cytosol	26.01	25.93
TraesCS7A01G442300.1	Wheat	mitochondrion	24.77	25.24
TraesCS7A01G442100.1	Wheat	mitochondrion	24.46	25.16
TraesCS6A01G120700.1	Wheat	nucleus	20.43	25.1
TraesCS6A01G262200.1	Wheat	nucleus	26.32	25.0
TraesCS7A01G441900.1	Wheat	mitochondrion	22.91	23.42
TraesCS4A01G089200.1	Wheat	plastid	22.6	21.53
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	22.6	20.8

Protein Annotations

EnsemblPlants:TraesCS2A01G290100.1	EnsemblPlantsGene:TraesCS2A01G290100	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF2	PFAM:PF13920	PFscan:PS50089
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:499578773..499579865

Molecular Weight (calculated)

34092.2 Da

IEP (calculated)

6.173

GRAVY (calculated)

-0.190

Length

323 amino acids

Sequence
(BLAST)

001: MAVQAQHLSH AFPHDLHAYN SVGALEDEMT GGSLFFPENL KRGPELEGAG NTVFGDVPRV DPTWHDNTTR SHGFAQRKRA RVVPEAPSYL ENQRGQGLVP
101: VGDVLTRAVG SGTASTSGRM INAAGPPQDL LSQLYRQGME IDAVLRLETD RMRAGLEEAR QQHVRALVSA AERAAARRLR AAEAALELAR CRNAKLSERL
201: TQICAEGQAW IRVAKSHEAV AAGLQATLDQ LLQSPCAAVA ATGADGDGDA EDARSCCFET PAGDDAAASK ASAAACRACG EGESCVLLLP CRHLCLCSAC
301: DAAVDTCPLC ATTKNASLHV LLS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.