Factsheet for TraesCS4A01G089200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G215100.1	Wheat	plastid	96.76	96.76
TraesCS4D01G215600.1	Wheat	plastid	96.46	96.46
Os03t0263800-01	Rice	nucleus, plastid	91.15	90.35
EER95135	Sorghum	plastid	87.61	88.13
Zm00001d028532_P001	Maize	nucleus, plastid	86.73	87.24
Zm00001d047856_P001	Maize	nucleus, plastid	84.37	86.93
HORVU4Hr1G061210.1	Barley	cytosol	94.99	77.97
GSMUA_Achr10P...	Banana	nucleus	59.0	62.89
GSMUA_Achr6P10180_001	Banana	plastid	64.31	62.82
Bra040255.1-P	Field mustard	nucleus	37.46	55.46
GSMUA_Achr11P...	Banana	nucleus	60.77	55.08
KRH05668	Soybean	nucleus	52.21	51.75
Solyc04g078760.2.1	Tomato	nucleus	50.44	50.59
KRH15376	Soybean	nucleus, plastid	51.03	49.29
VIT_18s0001g10370.t01	Wine grape	nucleus	47.49	49.09
CDY17103	Canola	cytosol	41.3	47.3
CDY06767	Canola	cytosol	42.18	47.04
AT1G45976.1	Thale cress	cytosol	44.84	46.77
CDY40841	Canola	cytosol	40.41	45.82
PGSC0003DMT400020551	Potato	nucleus	50.15	45.45
CDY17048	Canola	cytosol	41.59	45.34
Bra014051.1-P	Field mustard	nucleus	41.3	45.02
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	26.25	25.36
TraesCS2A01G290000.1	Wheat	cytosol	21.83	22.84
TraesCS2A01G290100.1	Wheat	cytosol	21.53	22.6
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	15.04	21.34
TraesCS1A01G215300.1	Wheat	cytosol	18.88	19.75
TraesCS6A01G262200.1	Wheat	nucleus	18.88	18.82
TraesCS6A01G120700.1	Wheat	nucleus	14.45	18.63
TraesCS7A01G442100.1	Wheat	mitochondrion	17.11	18.47
TraesCS7A01G442300.1	Wheat	mitochondrion	16.22	17.35
TraesCS7A01G441900.1	Wheat	mitochondrion	15.93	17.09
TraesCS3A01G448500.1	Wheat	mitochondrion	14.75	17.06
TraesCS4A01G293700.1	Wheat	mitochondrion	14.16	15.58

Protein Annotations

EnsemblPlants:TraesCS4A01G089200.1	EnsemblPlantsGene:TraesCS4A01G089200	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF10	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4A:+:95183338..95188733

Molecular Weight (calculated)

36308.4 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.410

Length

339 amino acids

Sequence
(BLAST)

001: MAFFSHHHLQ QPHPAAPPPQ QQQQPPAPLS FRNALPVPID GQIPAPLAFF NAPPAFXXXX XXXXXVDAAG LTAAAGMGWR QPREQELLGE NSQMSSIDFL
101: QTGSAVSTGL ALSLEDRRHG GGGAGAGNSS GDSPLLLLPM LDDDISREVQ RLDADMDRFI RAQSERMRQS ILEKVQAKQF EALASVEDKI LRKIRDKESE
201: VQNINKRNLE LEDQIKQMAG EVGAWQQRAK YNESMISALK YNLEQVCAHQ SKDFKEGCGD SEVDDTASCC NGGAVNLQLM PKENNHPKDL TACRVCKSSE
301: ACMLLLPCRH LCLCKECESK LSFCPLCQSS KILGMEIYM

Best Arabidopsis Sequence Match ( AT1G45976.1 )
(BLAST)

001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM

Arabidopsis Description

SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.