CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047856_P001	Maize	nucleus, plastid	94.96	97.26
Zm00001d028532_P001	Maize	nucleus, plastid	96.44	96.44
Os03t0263800-01	Rice	nucleus, plastid	94.66	93.27
TraesCS4B01G215100.1	Wheat	plastid	89.32	88.79
TraesCS4D01G215600.1	Wheat	plastid	89.02	88.5
TraesCS4A01G089200.1	Wheat	plastid	88.13	87.61
HORVU4Hr1G061210.1	Barley	cytosol	89.02	72.64
GSMUA_Achr10P...	Banana	nucleus	59.05	62.58
GSMUA_Achr6P10180_001	Banana	plastid	64.09	62.25
Bra040255.1-P	Field mustard	nucleus	37.98	55.9
GSMUA_Achr11P...	Banana	nucleus	61.13	55.08
KRH05668	Soybean	nucleus	53.12	52.34
Solyc04g078760.2.1	Tomato	nucleus	51.63	51.48
KRH15376	Soybean	nucleus, plastid	52.23	50.14
VIT_18s0001g10370.t01	Wine grape	nucleus	48.07	49.39
CDY06767	Canola	cytosol	43.03	47.7
CDY17103	Canola	cytosol	41.84	47.64
AT1G45976.1	Thale cress	cytosol	45.4	47.08
CDY40841	Canola	cytosol	41.54	46.82
PGSC0003DMT400020551	Potato	nucleus	51.63	46.52
CDY17048	Canola	cytosol	42.73	46.3
Bra014051.1-P	Field mustard	nucleus	42.43	45.98
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	27.6	25.48
EES12084	Sorghum	cytosol, nucleus, plastid	18.4	21.16
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	21.66	20.98
OQU83596	Sorghum	cytosol, extracellular	18.99	20.71
EES05709	Sorghum	nucleus	21.07	20.11
OQU83597	Sorghum	cytosol	20.18	20.06
OQU81469	Sorghum	cytosol	19.58	19.58
EER91098	Sorghum	nucleus	20.47	19.44
EES05161	Sorghum	plastid	19.29	19.17
OQU85032	Sorghum	cytosol	20.77	18.77
EES10713	Sorghum	cytosol	18.69	18.1
OQU81471	Sorghum	mitochondrion	18.99	16.93

Protein Annotations

EnsemblPlants:EER95135	EnsemblPlantsGene:SORBI_3001G428100	EntrezGene:8078809	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF10
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	ProteinID:EER95135	ProteinID:EER95135.1	RefSeq:XP_002468137.1
SEG:seg	unigene:Sbi.19055	UniParc:UPI0001A831B2	UniProt:C5WQ61	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:-:70719688..70726665

Molecular Weight (calculated)

37329.5 Da

IEP (calculated)

5.845

GRAVY (calculated)

-0.482

Length

337 amino acids

Sequence
(BLAST)

001: MAFFSHHHLQ QPHPQQAPPP HQQQPVLPSF RNALPVPVDG QIPAPLTFFN PPPAFPEQPA QAPLVDAMGL TAAAGLGWRQ PREQELLGEN SQMSSIDFLQ
101: TGSAVSTGLA LSLEDRRHGG GGAGNSSGDS PLLLLPMLDD DISREVQRLD ADMDRFIKAQ SERLRQSILE KVQAKQFEAL ASVEDKILRK IRDKEAEVET
201: INKRNSELED QIKHLGVEVG AWQQRAKYNE SMINALKYNL EQVCAHQSKD FKEGCGDSEV DDTASCRNGG AVNLQLTPKE NRQQKDLTAC RVCKSSEACM
301: LLLPCRHLCL CKECESKLSF CPLCQSSKIL GMEIYYA

Best Arabidopsis Sequence Match ( AT1G45976.1 )
(BLAST)

001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM

Arabidopsis Description

SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.