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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 2
  • mitochondrion 2
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d052639_P001 Maize extracellular 74.93 75.15
OQU83596 Sorghum cytosol, extracellular 52.51 57.61
Os11t0542100-01 Rice cytosol 49.56 51.38
EES12084 Sorghum cytosol, nucleus, plastid 33.92 39.25
EES10713 Sorghum cytosol 38.94 37.93
EES05161 Sorghum plastid 35.99 35.99
OQU85032 Sorghum cytosol 38.35 34.85
GSMUA_Achr10P... Banana nucleus 32.45 34.59
OQU81469 Sorghum cytosol 34.22 34.42
GSMUA_Achr6P16260_001 Banana nucleus 32.45 32.64
OQU81471 Sorghum mitochondrion 35.4 31.75
GSMUA_Achr6P08300_001 Banana plastid 29.79 29.19
KXG38894 Sorghum cytosol, mitochondrion, nucleus 24.19 23.56
EER91098 Sorghum nucleus 23.89 22.82
EES05709 Sorghum nucleus 23.6 22.66
Os02t0246101-00 Rice cytosol 10.91 21.39
EER95135 Sorghum plastid 20.06 20.18
KXG29382 Sorghum cytosol, mitochondrion, peroxisome, plastid 21.53 20.0
Protein Annotations
EnsemblPlants:OQU83597EnsemblPlantsGene:SORBI_3005G142300Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDncoils:CoilPANTHER:PTHR42647PANTHER:PTHR42647:SF6PFAM:PF13920PFscan:PS50089
ProteinID:OQU83597ProteinID:OQU83597.1SEG:segUniParc:UPI000B8BA8D0UniProt:A0A1Z5RIV6MapMan:35.2
Description
hypothetical protein
Coordinates
chr5:+:60463376..60464413
Molecular Weight (calculated)
34510.5 Da
IEP (calculated)
6.680
GRAVY (calculated)
-0.193
Length
339 amino acids
Sequence
(BLAST)
001: MAVQAQFGGL AGCLFPYGGG GGGWAEDQLQ ALLSAAAAGN NKQAQQQYHC AAGGVASAAQ SELTCNGGGG LGGVVASRKR GRDGDLEPQY HHHVPSSSAA
101: LLPIPPAVNI ASSSRMADSA AASTSGRRLL LPTADALLAD ELRRQGAEVD ALVRAGCERL RSGLERARKR QCEALARAAA ASATAHALRE KEAELAAARR
201: RAQELEERLR QAAAETQACN EAAASGLRAT LDALLLRAGA GGGCVTAQHA AEEEGFGESG GGGADDDAQS CCFVEAGAPS SWKPPAAKWA CRACGEGEAS
301: VLLLPCRHLC LCKACEPRAD VCPVCSGDKN AAIHIAPPN
Best Arabidopsis Sequence Match ( AT1G60610.1 )
(BLAST)
001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
Arabidopsis Description
At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.