CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016648_P001	Maize	cytosol	67.55	73.87
OQU85032	Sorghum	cytosol	57.82	52.55
OQU81469	Sorghum	cytosol	51.62	51.93
EES10713	Sorghum	cytosol	52.51	51.15
EES12084	Sorghum	cytosol, nucleus, plastid	41.89	48.46
OQU81471	Sorghum	mitochondrion	47.2	42.33
OQU83597	Sorghum	cytosol	35.99	35.99
OQU83596	Sorghum	cytosol, extracellular	32.74	35.92
GSMUA_Achr10P...	Banana	nucleus	30.68	32.7
GSMUA_Achr6P16260_001	Banana	nucleus	32.15	32.34
GSMUA_Achr6P08300_001	Banana	plastid	29.2	28.61
EER91098	Sorghum	nucleus	26.55	25.35
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	25.37	24.71
EES05709	Sorghum	nucleus	24.19	23.23
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	21.83	20.27
EER95135	Sorghum	plastid	19.17	19.29

Protein Annotations

EnsemblPlants:EES05161	EnsemblPlantsGene:SORBI_3004G161200	EntrezGene:8059606	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD
ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF3	PFAM:PF13920	ProteinID:EES05161	ProteinID:EES05161.1
RefSeq:XP_002452185.1	SEG:seg	UniParc:UPI0001A85683	UniProt:C5XTB0	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:+:50909294..50911916

Molecular Weight (calculated)

35518.1 Da

IEP (calculated)

7.289

GRAVY (calculated)

-0.204

Length

339 amino acids

Sequence
(BLAST)

001: MAVHAQYLSH AFSHDHRAIC SPALDNATSA SPSSLGHPGG GHPLPAAVGG NTVLSDLTSS NNNGCFLPRK RARVGDVSGA GAGLIMDLQG QRALLPPVPV
101: PVPVLAGDVQ RRLLCSAAAS TTTSGRPTAS VAPVSQSQGL LSHLYHHGVE IDALVRIENE RLRAGLREAR RRHVRTVVSA VERAAARRLR AAEAELERAL
201: ARNAELDGRL RQTEAEGQAW QDIARCHEGV AAGLRATLDN IMQTQTQPPC AGAGDDAGAD GDAEDAQSCC FELEQEQGEG GEASGGRRTR ACRWCGAAEA
301: CVLMLPCRHL CLCRGCEAGV QACPVCAATK NASLHVLLH

Best Arabidopsis Sequence Match ( AT1G79110.2 )
(BLAST)

001: MAVDAHHLFL SPPQLFSNRE LTMNNNTMEP TSGGFCNNNQ TGYGVVSPFS VPNHTSTTTT ATPPLLHVYG GSDTIPTTAG YYADGATNLD CEFFPLPTRK
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHMERVKYE IEEKRKRQAR TIMEAIEQGL VKRLRVKEEE
201: RERIGKVNHA LEERVKSLSI ENQIWRDLAQ TNEATANHLR TNLEHVLAQV KDVSRGAGLE KNMNEEDDAE SCCGSSCGGG GEETVRRRVG LEREAQDKAE
301: RRRRRMCRNC GEEESCVLLL PCRHLCLCGV CGSSVHTCPI CTSPKNASVH VNMSS

Arabidopsis Description

BRG2Probable BOI-related E3 ubiquitin-protein ligase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDI6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.