CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0402500-00	Rice	cytosol	52.52	56.01
EES10713	Sorghum	cytosol	57.57	55.75
EES12084	Sorghum	cytosol, nucleus, plastid	47.77	54.95
OQU81471	Sorghum	mitochondrion	59.94	53.44
TraesCS2D01G288000.1	Wheat	cytosol	49.55	51.7
TraesCS2A01G290100.1	Wheat	cytosol	49.55	51.7
EES05161	Sorghum	plastid	51.93	51.62
TraesCS2B01G306600.1	Wheat	cytosol	48.37	50.46
OQU85032	Sorghum	cytosol	49.85	45.04
OQU83596	Sorghum	cytosol, extracellular	35.91	39.16
GSMUA_Achr10P...	Banana	nucleus	32.34	34.28
OQU83597	Sorghum	cytosol	34.42	34.22
GSMUA_Achr6P16260_001	Banana	nucleus	32.34	32.34
GSMUA_Achr6P08300_001	Banana	plastid	32.05	31.21
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	27.6	26.72
EER91098	Sorghum	nucleus	27.3	25.92
EES05709	Sorghum	nucleus	23.74	22.66
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	21.96	20.27
EER95135	Sorghum	plastid	19.58	19.58

Protein Annotations

EnsemblPlants:OQU81469	EnsemblPlantsGene:SORBI_3006G062900	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil
PANTHER:PTHR42647	PANTHER:PTHR42647:SF2	ProteinID:OQU81469	ProteinID:OQU81469.1	SEG:seg	UniParc:UPI000B42669F
UniProt:A0A1Z5RD04	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:42013675..42018458

Molecular Weight (calculated)

34935.2 Da

IEP (calculated)

6.042

GRAVY (calculated)

-0.065

Length

337 amino acids

Sequence
(BLAST)

001: MAVQARHLSH AFFHDPHAFG FRAMEDAAAA GSTVLLDDYG VRAPAAAPAG IGGTTTLRSD FPRGDLACDY ALEPRKRPRV APATFSEDQS SVVMRPPAPA
101: VGDLQDRVLG SGAASSSGRL GNGASVSQPQ GLLLSTLYHQ DVDIDALVRL ESERIRAGLE EARRRHAREL VAAVERAASG RARAAEAELE RALRRNAELE
201: EKARQMGAEC QAWMGVARSH EAVAAGLRAT LDQMLRLQSP CACTAAAVSV NEGAAAEDAQ SCCGFEAPAP DADADAASNE AAAASSSCSC KACGGGGACV
301: LLLPCRHLCL CRSCEAAVDA CPVCSAAKNA SLHVLLC

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.