Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU81469 | Sorghum | cytosol | 54.95 | 47.77 |
| Os04t0402500-00 | Rice | cytosol | 51.19 | 47.47 |
| TraesCS2D01G288000.1 | Wheat | cytosol | 49.83 | 45.2 |
| TraesCS2A01G290100.1 | Wheat | cytosol | 49.83 | 45.2 |
| OQU81471 | Sorghum | mitochondrion | 57.34 | 44.44 |
| EES10713 | Sorghum | cytosol | 52.56 | 44.25 |
| TraesCS2B01G306600.1 | Wheat | cytosol | 48.12 | 43.65 |
| EES05161 | Sorghum | plastid | 48.46 | 41.89 |
| OQU85032 | Sorghum | cytosol | 49.15 | 38.61 |
| OQU83596 | Sorghum | cytosol, extracellular | 37.88 | 35.92 |
| OQU83597 | Sorghum | cytosol | 39.25 | 33.92 |
| GSMUA_Achr10P... | Banana | nucleus | 34.81 | 32.08 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 33.45 | 28.32 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 32.08 | 27.89 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 27.99 | 23.56 |
| EER91098 | Sorghum | nucleus | 27.99 | 23.1 |
| EES05709 | Sorghum | nucleus | 24.91 | 20.68 |
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 23.55 | 18.9 |
| EER95135 | Sorghum | plastid | 21.16 | 18.4 |
Protein Annotations
| EnsemblPlants:EES12084 | EnsemblPlantsGene:SORBI_3006G063200 | EntrezGene:8075242 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD |
| ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF2 | ProteinID:EES12084 | ProteinID:EES12084.1 | RefSeq:XP_002447756.1 |
| SEG:seg | unigene:Sbi.20328 | UniParc:UPI0001A87338 | UniProt:C5YFF2 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr6:-:42091028..42094961
Molecular Weight (calculated)
30972.3 Da
IEP (calculated)
6.681
GRAVY (calculated)
0.025
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMQARHHSH DYFLSRAGSL FLDEYAGCVP LPTSPAVGIR DMPLLSDFAG SELSFGYSFL PRKRARMEDH RVVLPPAVMQ GLVQVQVQLP MTSSNVMGSG
101: AVTSTSGREI DALLRVESER MRAALEAAWR RHARALASAV GRTAAGRMRA AESELDGALR RNGELEETAR QMVAECQAWM GVARSHEAVA AGLRASLDQL
201: LLQSPPCAVA TGGACEGHGE TEDARSCCFE PGCSGGRGPQ GAVEECRSCG GGEACVLLLP CRHLCLCRAC EAAVDACLVC AAAKNASLLV LVS
101: AVTSTSGREI DALLRVESER MRAALEAAWR RHARALASAV GRTAAGRMRA AESELDGALR RNGELEETAR QMVAECQAWM GVARSHEAVA AGLRASLDQL
201: LLQSPPCAVA TGGACEGHGE TEDARSCCFE PGCSGGRGPQ GAVEECRSCG GGEACVLLLP CRHLCLCRAC EAAVDACLVC AAAKNASLLV LVS
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.