Factsheet for Os04t0402500-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0403200-01	Rice	nucleus	68.04	61.96
TraesCS2A01G290100.1	Wheat	cytosol	60.13	58.82
TraesCS2D01G288000.1	Wheat	cytosol	59.49	58.2
TraesCS2B01G306600.1	Wheat	cytosol	57.91	56.66
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	56.01	53.64
OQU81469	Sorghum	cytosol	56.01	52.52
Zm00001d025310_P001	Maize	cytosol	52.22	51.4
EES12084	Sorghum	cytosol, nucleus, plastid	47.47	51.19
OQU81471	Sorghum	mitochondrion	55.7	46.56
Os11t0542100-01	Rice	cytosol	39.87	38.53
Os02t0246101-00	Rice	cytosol	20.89	38.15
GSMUA_Achr10P...	Banana	nucleus	33.54	33.33
GSMUA_Achr6P16260_001	Banana	nucleus	33.86	31.75
GSMUA_Achr6P08300_001	Banana	plastid	32.91	30.06
Os10t0565500-01	Rice	nucleus	30.06	27.07
Os02t0687500-01	Rice	cytosol, nucleus, plastid	25.32	25.16
Os11t0543100-01	Rice	cytosol	14.24	22.61
Os02t0130300-02	Rice	cytosol, nucleus, plastid	23.42	21.57
Os03t0263800-01	Rice	nucleus, plastid	21.84	20.18

Protein Annotations

EnsemblPlants:Os04t0402500-00	EnsemblPlantsGene:Os04g0402500	EntrezGene:4335734	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF2	PFAM:PF13920
PFscan:PS50089	ProteinID:BAF14608.1	ProteinID:BAS89055.1	ProteinID:CAD40789.1	ProteinID:CAE02021.2	RefSeq:XP_015635439.1
SEG:seg	UniParc:UPI00001B0CEB	UniProt:Q7FAF5	MapMan:35.2	:	:

Description

Zinc finger, RING-type domain containing protein. (Os04t0402500-00)

Coordinates

chr4:-:19941027..19942075

Molecular Weight (calculated)

32289.5 Da

IEP (calculated)

6.039

GRAVY (calculated)

0.163

Length

316 amino acids

Sequence
(BLAST)

001: MAVQAQRLAQ AFPYDLHAAA SGGALFLDEL AGECAPPMAA VEGIGGAVVF GGDNGEYGFV ERKRPRVAAG LLEDQRAVLA HAMAAPLQGI LPFGDVAGRA
101: ACAGAASTSG RRMDGAGGIS QGLLSQLYHH GVEIDALVRL EAERMRAGLE EAQRRHVRAL VAAAARATTG RVRAAEAELE RARCRNAELE EKLRQVSAEG
201: QAWMGVAKSH EAVAAGLRAT LDQLLLQSPC AAAAAAASAG EGDAEDAHSC CFETPAAAAD VAVSTATSCK ACRVAEASVL LLPCRHLCLC GACEAAADAC
301: PVCAATKNAS VHVLLS

Best Arabidopsis Sequence Match ( AT1G79110.3 )
(BLAST)

001: MNNNTMEPTS GGFCNNNQTG YGVVSPFSVP NHTSTTTTAT PPLLHVYGGS DTIPTTAGYY ADGATNLDCE FFPLPTRKRS RDSSRSNYHH LLLQNPRSSS
101: CVNAATTTTT TTLFSFLGQD IDISSHMNQQ QHEIDRFVSL HMERVKYEIE EKRKRQARTI MEAIEQGLVK RLRVKEEERE RIGKVNHALE ERVKSLSIEN
201: QIWRDLAQTN EATANHLRTN LEHVLAQVKD VSRGAGLEKN MNEEDDAESC CGSSCGGGGE ETVRRRVGLE REAQDKAERR RRRMCRNCGE EESCVLLLPC
301: RHLCLCGVCG SSVHTCPICT SPKNASVHVN MSS

Arabidopsis Description

BRG2Probable BOI-related E3 ubiquitin-protein ligase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDI6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.