Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 63.2 | 66.98 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus, plastid | 44.51 | 52.08 |
| GSMUA_Achr11P... | Banana | nucleus | 48.07 | 50.78 |
| GSMUA_Achr6P11810_001 | Banana | nucleus | 44.51 | 49.34 |
| GSMUA_Achr2P21330_001 | Banana | nucleus | 41.54 | 48.78 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 46.88 | 45.66 |
| Zm00001d010503_P001 | Maize | cytosol, mitochondrion | 14.84 | 38.76 |
| Zm00001d026161_P001 | Maize | cytosol | 16.02 | 38.3 |
| Zm00001d025319_P001 | Maize | cytosol | 34.12 | 37.22 |
| Zm00001d052640_P001 | Maize | cytosol, extracellular, nucleus | 32.05 | 36.49 |
| Zm00001d004743_P001 | Maize | plastid | 17.8 | 36.36 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 19.88 | 35.64 |
| TraesCS2A01G290000.1 | Wheat | cytosol | 33.83 | 35.19 |
| Zm00001d003850_P001 | Maize | extracellular | 34.42 | 34.73 |
| TraesCS2B01G306500.1 | Wheat | cytosol | 33.23 | 34.57 |
| EES10713 | Sorghum | cytosol | 35.61 | 34.48 |
| TraesCS2D01G287900.1 | Wheat | cytosol | 32.64 | 34.38 |
| Zm00001d025310_P001 | Maize | cytosol | 32.64 | 34.27 |
| TraesCS2D01G288000.1 | Wheat | cytosol | 32.64 | 34.06 |
| Os04t0402500-00 | Rice | cytosol | 31.75 | 33.86 |
| TraesCS2A01G290100.1 | Wheat | cytosol | 32.34 | 33.75 |
| Os04t0403200-01 | Rice | nucleus | 34.42 | 33.43 |
| TraesCS2B01G306600.1 | Wheat | cytosol | 31.75 | 33.13 |
| OQU83596 | Sorghum | cytosol, extracellular | 29.97 | 32.69 |
| OQU83597 | Sorghum | cytosol | 32.64 | 32.45 |
| OQU81469 | Sorghum | cytosol | 32.34 | 32.34 |
| EES05161 | Sorghum | plastid | 32.34 | 32.15 |
| Zm00001d003852_P001 | Maize | cytosol, nucleus, plastid | 31.45 | 32.12 |
| EES12084 | Sorghum | cytosol, nucleus, plastid | 27.89 | 32.08 |
| Zm00001d016648_P001 | Maize | cytosol | 29.38 | 31.94 |
| Zm00001d052639_P001 | Maize | extracellular | 31.45 | 31.36 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 21.36 | 31.3 |
| Os11t0542100-01 | Rice | cytosol | 29.97 | 30.89 |
| OQU85032 | Sorghum | cytosol | 32.94 | 29.76 |
| OQU81471 | Sorghum | mitochondrion | 32.64 | 29.1 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 21.07 | 29.1 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 21.07 | 28.74 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 23.74 | 27.97 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 21.36 | 26.77 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 18.99 | 26.56 |
| GSMUA_Achr10P... | Banana | nucleus | 24.63 | 26.1 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 22.55 | 25.5 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 24.04 | 25.0 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 24.33 | 24.85 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 24.63 | 23.92 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 20.47 | 23.88 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 21.07 | 23.28 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 21.66 | 22.74 |
| GSMUA_Achr11P... | Banana | nucleus | 24.04 | 21.66 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 21.36 | 21.36 |
| Os11t0543100-01 | Rice | cytosol | 12.17 | 20.6 |
| Os02t0246101-00 | Rice | cytosol | 9.79 | 19.08 |
| Zm00001d003613_P002 | Maize | nucleus | 20.77 | 16.13 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P16260_001 | EnsemblPlants:GSMUA_Achr6T16260_001 | EnsemblPlantsGene:GSMUA_Achr6G16260_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF2 | PFscan:PS50089 |
| SEG:seg | UniParc:UPI0002952307 | UniProt:M0T7H4 | MapMan:35.2 | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G16260_001]
Coordinates
chr6:-:10837740..10839141
Molecular Weight (calculated)
36880.9 Da
IEP (calculated)
6.999
GRAVY (calculated)
-0.389
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAQHPSG FAFSPDFRNR GGSFVIEDFQ MLQDQGNTVG LYGGHLGGIN NATVFSDPQS ELTCNASGKR KRPLEEPPMV MPQPIPDYDS NLASVLSPIC
101: YPDITASAAG CQQSRLLESA GTSTSGRTAS PLTMNLVSQI FHHGVEIDSL IRLQNERLQS GVEEARKKYF KALLWGMEQR AAKRLREKEA ELEKARRKNA
201: ELEERVRQLA TEGEMWFAVA RNNESIAASL RADLEQILLR NAAAAQVKEG YGDTDDDAQS CRSVEATGRK SIAPAPAPTD EVRRWPRAAC KSCAEGDVCV
301: LLLPCKHLCL CKSCESKTHA CPCCGTVKNA CLQIFMT
101: YPDITASAAG CQQSRLLESA GTSTSGRTAS PLTMNLVSQI FHHGVEIDSL IRLQNERLQS GVEEARKKYF KALLWGMEQR AAKRLREKEA ELEKARRKNA
201: ELEERVRQLA TEGEMWFAVA RNNESIAASL RADLEQILLR NAAAAQVKEG YGDTDDDAQS CRSVEATGRK SIAPAPAPTD EVRRWPRAAC KSCAEGDVCV
301: LLLPCKHLCL CKSCESKTHA CPCCGTVKNA CLQIFMT
001: MIRPNKRGRE AESISNNIQR QQQKLQMSLN YNYNNTSVRE EVPKENLVST GLRLSYDDDE HNSSVTSASG SILAASPIFQ SLDDSLRIDL HRQKDEFDQF
101: IKIQAAQMAK GVRDMKQRHI ASFLTTLEKG VSKKLQEKDH EINDMNKKNK ELVERIKQVA MEAQNWHYRA KYNESVVNVL KANLQQAMSH NNSVIAAADQ
201: GKEGFGDSEI DDAASSYIDP NNNNNNNMGI HQRMRCKMCN VKEVSVLIVP CRHLSLCKEC DVFTKICPVC KSLKSSCVQV FFS
101: IKIQAAQMAK GVRDMKQRHI ASFLTTLEKG VSKKLQEKDH EINDMNKKNK ELVERIKQVA MEAQNWHYRA KYNESVVNVL KANLQQAMSH NNSVIAAADQ
201: GKEGFGDSEI DDAASSYIDP NNNNNNNMGI HQRMRCKMCN VKEVSVLIVP CRHLSLCKEC DVFTKICPVC KSLKSSCVQV FFS
Arabidopsis Description
Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.