Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P14860_001 | Banana | nucleus | 68.48 | 67.06 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 53.03 | 60.55 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 46.36 | 56.88 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 55.76 | 56.79 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 51.52 | 55.74 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 50.0 | 48.96 |
| KRH28216 | Soybean | nucleus | 45.76 | 45.9 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 43.64 | 45.28 |
| KRH77271 | Soybean | plastid | 43.64 | 44.72 |
| PGSC0003DMT400004642 | Potato | nucleus | 46.67 | 44.51 |
| Solyc08g077460.2.1 | Tomato | nucleus | 46.67 | 44.25 |
| EES05709 | Sorghum | nucleus | 46.67 | 43.63 |
| Solyc06g061020.2.1 | Tomato | nucleus | 43.64 | 43.5 |
| Bra024967.1-P | Field mustard | plastid | 32.42 | 43.32 |
| Solyc08g007120.2.1 | Tomato | nucleus | 43.03 | 42.9 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 41.21 | 42.37 |
| KRH04275 | Soybean | nucleus | 45.76 | 42.3 |
| Zm00001d017649_P001 | Maize | plastid | 42.42 | 42.3 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 41.52 | 42.28 |
| Os10t0565500-01 | Rice | nucleus | 44.85 | 42.17 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 41.82 | 42.07 |
| KRH57556 | Soybean | nucleus | 44.55 | 42.0 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 40.91 | 41.41 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 41.52 | 41.02 |
| PGSC0003DMT400068387 | Potato | nucleus | 42.42 | 40.94 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 41.82 | 40.83 |
| Zm00001d047069_P001 | Maize | cytosol | 40.91 | 40.66 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 42.12 | 40.52 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 42.73 | 40.52 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 43.03 | 40.23 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 40.91 | 40.18 |
| AT5G47050.1 | Thale cress | nucleus | 36.36 | 40.0 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 40.91 | 39.71 |
| CDY09609 | Canola | cytosol | 29.7 | 39.68 |
| CDX77733 | Canola | nucleus | 36.06 | 39.67 |
| CDY33511 | Canola | nucleus | 36.36 | 39.6 |
| PGSC0003DMT400052841 | Potato | nucleus | 41.52 | 39.26 |
| AT1G32740.1 | Thale cress | nucleus | 36.97 | 39.1 |
| CDY51856 | Canola | cytosol | 34.55 | 37.62 |
| CDY37172 | Canola | cytosol | 34.24 | 37.42 |
| Bra017511.1-P | Field mustard | nucleus | 33.94 | 37.09 |
| CDY43447 | Canola | nucleus | 33.94 | 37.09 |
| CDX90458 | Canola | cytosol | 33.64 | 36.51 |
| AT4G17680.1 | Thale cress | nucleus | 33.33 | 35.03 |
| CDY03162 | Canola | cytosol | 33.94 | 34.78 |
| Bra022093.1-P | Field mustard | nucleus | 22.42 | 33.64 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 22.42 | 30.71 |
| Bra012650.1-P | Field mustard | nucleus | 32.42 | 30.66 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 17.27 | 30.32 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 20.0 | 28.7 |
| GSMUA_Achr2P21330_001 | Banana | nucleus | 24.85 | 28.57 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 19.39 | 25.91 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus, plastid | 22.42 | 25.69 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 18.79 | 25.41 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 21.82 | 25.17 |
| GSMUA_Achr10P... | Banana | nucleus | 24.24 | 25.16 |
| GSMUA_Achr6P11810_001 | Banana | nucleus | 22.73 | 24.67 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 24.85 | 24.33 |
| GSMUA_Achr11P... | Banana | nucleus | 23.03 | 23.82 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 24.55 | 23.41 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 20.61 | 22.82 |
| GSMUA_Achr10P... | Banana | nucleus | 21.52 | 22.33 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 21.82 | 20.75 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 19.39 | 19.94 |
| GSMUA_Achr11P... | Banana | nucleus | 22.42 | 19.79 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P18250_001 | EnsemblPlants:GSMUA_Achr2T18250_001 | EnsemblPlantsGene:GSMUA_Achr2G18250_001 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF13 |
| PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | UniParc:UPI000295B39F | UniProt:M0S916 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G18250_001]
Coordinates
chr2:+:18691392..18693423
Molecular Weight (calculated)
35733.4 Da
IEP (calculated)
6.773
GRAVY (calculated)
-0.379
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAQYRSN VLLLNGSELE AKEMEPLFLD QSLVFFANGA NGNPRKRGRE VTSVPMASMP QQSQPVNLFS LQPLPVSAPL PPPTLVSLAE LRTLPRPLVS
101: TGLRLAFGDQ NQHQSQNQSN PLLCSSSPAS SSLFSSLLFE DLAAQINQQK EEIEQFLHAQ GEQLQRTLAE KRQKHYGVLL GAAEKSAARR LREKEAEVER
201: EALRSSELED RLARLRTESM AWQAKAMADQ VTAASLHAQL QHAAATAATA PQGNPGGCGD PPPAEDAESA NVNPGHSEPE HACRTCRRRP ASVVLVPCRH
301: LCLCDACDGT AESCPVCRSI RTGSIHVVLS
101: TGLRLAFGDQ NQHQSQNQSN PLLCSSSPAS SSLFSSLLFE DLAAQINQQK EEIEQFLHAQ GEQLQRTLAE KRQKHYGVLL GAAEKSAARR LREKEAEVER
201: EALRSSELED RLARLRTESM AWQAKAMADQ VTAASLHAQL QHAAATAATA PQGNPGGCGD PPPAEDAESA NVNPGHSEPE HACRTCRRRP ASVVLVPCRH
301: LCLCDACDGT AESCPVCRSI RTGSIHVVLS
001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.