Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024967.1-P | Field mustard | plastid | 79.67 | 96.76 |
| CDY33511 | Canola | nucleus | 96.67 | 95.71 |
| CDY37172 | Canola | cytosol | 80.0 | 79.47 |
| CDY43447 | Canola | nucleus | 79.33 | 78.81 |
| CDY51856 | Canola | cytosol | 78.67 | 77.89 |
| AT5G47050.1 | Thale cress | nucleus | 75.33 | 75.33 |
| CDY03162 | Canola | cytosol | 79.33 | 73.91 |
| CDY09609 | Canola | cytosol | 48.0 | 58.3 |
| CDX90458 | Canola | cytosol | 56.33 | 55.59 |
| KRH77271 | Soybean | plastid | 48.67 | 45.34 |
| KRH28216 | Soybean | nucleus | 48.0 | 43.77 |
| Solyc06g061020.2.1 | Tomato | nucleus | 48.0 | 43.5 |
| Solyc08g077460.2.1 | Tomato | nucleus | 50.0 | 43.1 |
| PGSC0003DMT400004642 | Potato | nucleus | 49.67 | 43.06 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 48.33 | 43.03 |
| Solyc08g007120.2.1 | Tomato | nucleus | 46.33 | 41.99 |
| CDY34127 | Canola | extracellular | 8.33 | 41.67 |
| PGSC0003DMT400068387 | Potato | nucleus | 47.33 | 41.52 |
| KRH04275 | Soybean | nucleus | 47.33 | 39.78 |
| KRH57556 | Soybean | nucleus | 45.67 | 39.14 |
| PGSC0003DMT400052841 | Potato | nucleus | 44.67 | 38.4 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 34.0 | 37.92 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 37.67 | 37.05 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 39.67 | 36.06 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 34.33 | 35.64 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 39.33 | 35.01 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 37.0 | 34.91 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 36.33 | 33.64 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 37.0 | 33.23 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 37.0 | 32.84 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 36.67 | 32.07 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 36.33 | 32.06 |
| Os10t0565500-01 | Rice | nucleus | 37.33 | 31.91 |
| Zm00001d047069_P001 | Maize | cytosol | 35.0 | 31.63 |
| Zm00001d017649_P001 | Maize | plastid | 34.33 | 31.12 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 32.67 | 30.53 |
| EES05709 | Sorghum | nucleus | 35.67 | 30.31 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 34.67 | 29.89 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 32.0 | 29.63 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 34.67 | 29.46 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 32.0 | 29.45 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 31.67 | 28.96 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 32.33 | 28.87 |
| CDY37958 | Canola | cytosol, plastid | 31.33 | 27.73 |
| CDX93396 | Canola | cytosol | 31.0 | 27.68 |
| CDY24542 | Canola | nucleus | 29.0 | 26.61 |
| CDY17103 | Canola | cytosol | 26.0 | 26.35 |
| CDY52651 | Canola | cytosol | 19.33 | 26.24 |
| CDY20611 | Canola | nucleus | 29.67 | 26.1 |
| CDY07541 | Canola | cytosol | 20.33 | 26.07 |
| CDY09318 | Canola | cytosol | 20.33 | 26.07 |
| CDX94520 | Canola | cytosol | 20.33 | 26.07 |
| CDY21311 | Canola | cytosol | 20.33 | 26.07 |
| CDY20963 | Canola | nucleus | 29.33 | 26.04 |
| CDY06767 | Canola | cytosol | 26.0 | 25.66 |
| CDX72513 | Canola | cytosol | 20.0 | 25.64 |
| CDY40647 | Canola | cytosol | 20.0 | 25.53 |
| CDX69109 | Canola | nucleus | 17.0 | 24.88 |
| CDY15019 | Canola | cytosol | 20.67 | 24.7 |
| CDX73168 | Canola | cytosol | 20.67 | 24.7 |
| CDX76311 | Canola | cytosol | 20.67 | 24.51 |
| CDY40841 | Canola | cytosol | 24.33 | 24.41 |
| CDY17048 | Canola | cytosol | 25.0 | 24.12 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 20.33 | 24.11 |
| CDY26402 | Canola | cytosol | 23.67 | 23.99 |
| CDY01615 | Canola | cytosol | 24.0 | 23.61 |
| CDY71607 | Canola | cytosol | 24.0 | 23.53 |
| CDY51918 | Canola | cytosol | 22.0 | 23.0 |
| CDX87407 | Canola | nucleus | 23.33 | 22.15 |
| CDX88507 | Canola | nucleus | 21.67 | 21.81 |
| CDX79294 | Canola | nucleus | 21.67 | 21.38 |
| CDY43390 | Canola | cytosol | 23.0 | 21.23 |
| CDY24237 | Canola | nucleus | 22.67 | 20.99 |
| CDY71192 | Canola | cytosol | 19.33 | 20.71 |
| CDY13070 | Canola | cytosol | 19.0 | 20.43 |
| CDX82568 | Canola | nucleus | 22.67 | 20.0 |
| CDY64561 | Canola | nucleus | 22.67 | 20.0 |
| CDY46345 | Canola | cytosol | 18.33 | 19.5 |
| CDY18062 | Canola | cytosol | 18.0 | 19.15 |
| CDY23552 | Canola | cytosol | 9.67 | 13.36 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078CRG0 |
| EnsemblPlants:CDX77733 | ProteinID:CDX77733 | ProteinID:CDX77733.1 | ncoils:Coil | InterPro:E3ligase_BOI_like | EnsemblPlantsGene:GSBRNA2T00128752001 |
| InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PIRSF:PIRSF036836 | PFscan:PS50089 | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF13 | UniPathway:UPA00144 | UniParc:UPI0004EEA362 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC07g19870D
Coordinates
chrLK031812:+:1431553..1433389
Molecular Weight (calculated)
33624.5 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.739
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQTHHHHP TMFLNRNGQE GNDFSPELQK SQFPSITTGV NTRKRAREVI DLENMTSPMN PPPSTPPQFI SRRQTPNIVS TGLRLSQGQS QNREQPPSSS
101: SFPMINEDIA GEIKRQSDEL DMFLQTQDEQ LRRMLAENSE RHYRELLKTT EESVRRRLRE KEAEIEKATR RHAELESRAM QIETESRAWQ ARAASKEAEA
201: TTLQARLQQA VAHGGGVTVA EPNSGSVDGV DEAEDAESAY VDPDRLELTG PSCRICWRRS ATVLALPCRH LILCKGCDGS VRVCPLCLGS KNSSVEVFFS
101: SFPMINEDIA GEIKRQSDEL DMFLQTQDEQ LRRMLAENSE RHYRELLKTT EESVRRRLRE KEAEIEKATR RHAELESRAM QIETESRAWQ ARAASKEAEA
201: TTLQARLQQA VAHGGGVTVA EPNSGSVDGV DEAEDAESAY VDPDRLELTG PSCRICWRRS ATVLALPCRH LILCKGCDGS VRVCPLCLGS KNSSVEVFFS
001: MAVQAHHHPS TLFFLNNGQE GNDQPHKSQF HSINAGVDTR KRAREVSSVI DLDITAAPMN PPPQTPPQVI GRRQNPNVVS TGLRLSREQS QNQEQRFLSF
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.