Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09609 | Canola | cytosol | 76.64 | 94.33 |
| Bra012650.1-P | Field mustard | nucleus | 97.37 | 84.81 |
| AT4G17680.1 | Thale cress | nucleus | 72.04 | 69.75 |
| CDY43447 | Canola | nucleus | 56.58 | 56.95 |
| CDX77733 | Canola | nucleus | 55.59 | 56.33 |
| CDY51856 | Canola | cytosol | 55.92 | 56.11 |
| CDY33511 | Canola | nucleus | 55.92 | 56.11 |
| CDY37172 | Canola | cytosol | 55.59 | 55.96 |
| CDY03162 | Canola | cytosol | 56.25 | 53.11 |
| KRH77271 | Soybean | plastid | 43.42 | 40.99 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 45.07 | 40.65 |
| KRH28216 | Soybean | nucleus | 43.75 | 40.43 |
| PGSC0003DMT400004642 | Potato | nucleus | 43.75 | 38.44 |
| Solyc08g077460.2.1 | Tomato | nucleus | 43.75 | 38.22 |
| KRH04275 | Soybean | nucleus | 43.42 | 36.97 |
| Solyc06g061020.2.1 | Tomato | nucleus | 40.13 | 36.86 |
| KRH57556 | Soybean | nucleus | 42.43 | 36.86 |
| CDY34127 | Canola | extracellular | 7.24 | 36.67 |
| Solyc08g007120.2.1 | Tomato | nucleus | 39.8 | 36.56 |
| PGSC0003DMT400068387 | Potato | nucleus | 39.47 | 35.09 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 30.92 | 34.94 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 35.53 | 33.96 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 36.51 | 33.64 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 31.58 | 33.22 |
| PGSC0003DMT400052841 | Potato | nucleus | 37.5 | 32.66 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 32.57 | 32.46 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 33.55 | 31.48 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 32.89 | 31.15 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 33.22 | 30.98 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 33.55 | 30.54 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 32.89 | 30.49 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 33.22 | 30.06 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 33.22 | 29.97 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 33.22 | 29.88 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 32.89 | 29.41 |
| Os10t0565500-01 | Rice | nucleus | 33.88 | 29.34 |
| Zm00001d047069_P001 | Maize | cytosol | 31.91 | 29.22 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 32.89 | 29.15 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 33.22 | 29.02 |
| Zm00001d017649_P001 | Maize | plastid | 31.58 | 29.0 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 30.59 | 28.7 |
| EES05709 | Sorghum | nucleus | 32.24 | 27.76 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 31.91 | 27.48 |
| CDY52651 | Canola | cytosol | 18.75 | 25.79 |
| CDX69109 | Canola | nucleus | 17.11 | 25.37 |
| CDX72513 | Canola | cytosol | 19.08 | 24.79 |
| CDY40647 | Canola | cytosol | 18.75 | 24.26 |
| CDX94520 | Canola | cytosol | 18.42 | 23.93 |
| CDY07541 | Canola | cytosol | 18.42 | 23.93 |
| CDY09318 | Canola | cytosol | 18.42 | 23.93 |
| CDY21311 | Canola | cytosol | 18.42 | 23.93 |
| CDY37958 | Canola | cytosol, plastid | 26.64 | 23.89 |
| CDX93396 | Canola | cytosol | 26.32 | 23.81 |
| CDY17103 | Canola | cytosol | 23.03 | 23.65 |
| CDX73168 | Canola | cytosol | 19.41 | 23.51 |
| CDY15019 | Canola | cytosol | 19.41 | 23.51 |
| CDX76311 | Canola | cytosol | 19.41 | 23.32 |
| CDY40841 | Canola | cytosol | 22.7 | 23.08 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 19.08 | 22.92 |
| CDY06767 | Canola | cytosol | 22.7 | 22.7 |
| CDY20611 | Canola | nucleus | 25.0 | 22.29 |
| CDY20963 | Canola | nucleus | 24.34 | 21.89 |
| CDX87407 | Canola | nucleus | 22.7 | 21.84 |
| CDX88507 | Canola | nucleus | 21.38 | 21.81 |
| CDY24542 | Canola | nucleus | 23.36 | 21.71 |
| CDY26402 | Canola | cytosol | 21.05 | 21.62 |
| CDY17048 | Canola | cytosol | 22.04 | 21.54 |
| CDY51918 | Canola | cytosol | 20.07 | 21.25 |
| CDY01615 | Canola | cytosol | 20.72 | 20.66 |
| CDY71607 | Canola | cytosol | 20.72 | 20.59 |
| CDY43390 | Canola | cytosol | 21.71 | 20.31 |
| CDX79294 | Canola | nucleus | 20.07 | 20.07 |
| CDY24237 | Canola | nucleus | 21.38 | 20.06 |
| CDY71192 | Canola | cytosol | 18.09 | 19.64 |
| CDY13070 | Canola | cytosol | 17.76 | 19.35 |
| CDY18062 | Canola | cytosol | 17.43 | 18.79 |
| CDX82568 | Canola | nucleus | 20.72 | 18.53 |
| CDY46345 | Canola | cytosol | 17.11 | 18.44 |
| CDY64561 | Canola | nucleus | 20.39 | 18.24 |
| CDY23552 | Canola | cytosol | 9.87 | 13.82 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078DTC3 |
| EnsemblPlants:CDX90458 | ProteinID:CDX90458 | ProteinID:CDX90458.1 | ncoils:Coil | InterPro:E3ligase_BOI_like | EnsemblPlantsGene:GSBRNA2T00151070001 |
| InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PIRSF:PIRSF036836 | PFscan:PS50089 | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF13 | SMART:SM00184 | UniPathway:UPA00144 | UniParc:UPI0004EE0592 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g43230D
Coordinates
chrLK031863:+:353588..354797
Molecular Weight (calculated)
33671.9 Da
IEP (calculated)
6.597
GRAVY (calculated)
-0.505
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVRTHHPSR FLFVNNNGQE DNNCSLQPQD THFTLIKAGV VDSRKRSRDV SSVAAQMNPP PPKPPQVIGM SELLQSHNRK TLNMVSTGLL RSSHEQSQNG
101: EQLLSSSSML PGDLAGESKR QRDELDSFIQ TQGEELQRKL ALYGESRYVE LLYAAEELAG RRVREKEAEL EKATRRHAEL EARAAQLTEE ARTWQLRAAT
201: REAEVSSLHA HIQKVIASQA TAEKQRTIGG ETEEAEDAES VFVDPERIEL IGPCCSICRR NSATVMALPC RHLVLCKGCD GGGDVRVCPI CLAVKNFGVE
301: VLFS
101: EQLLSSSSML PGDLAGESKR QRDELDSFIQ TQGEELQRKL ALYGESRYVE LLYAAEELAG RRVREKEAEL EKATRRHAEL EARAAQLTEE ARTWQLRAAT
201: REAEVSSLHA HIQKVIASQA TAEKQRTIGG ETEEAEDAES VFVDPERIEL IGPCCSICRR NSATVMALPC RHLVLCKGCD GGGDVRVCPI CLAVKNFGVE
301: VLFS
001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.