CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80127
CDY08162
CDY36901
CDY44976
CDY53013
CDY58069
CDY58070
CDY65680
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32295.1	CDX80127	AT2G47700.1	21798944
AT4G32295.1	CDY53013	AT2G47700.1	21798944
AT4G32295.1	CDY36901	AT3G48150.1	21798944
AT4G32295.1	CDY44976	AT3G48150.1	21798944
AT4G32295.1	CDY58069	AT3G48150.1	21798944
AT4G32295.1	CDY58070	AT3G48150.1	21798944
AT4G32295.1	CDY70805	AT3G48150.1	21798944
AT4G32295.1	CDY08162	AT3G49690.1	21798944
AT4G32295.1	CDY65680	AT3G49690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023956.1-P	Field mustard	cytosol	100.0	100.0
CDX72353	Canola	cytosol	75.77	81.41
CDX75234	Canola	cytosol	73.85	75.29
AT4G32295.1	Thale cress	cytosol	67.69	73.95
CDX68833	Canola	nucleus	73.08	73.64
KRH61761	Soybean	nucleus	51.15	48.36
KRH52430	Soybean	nucleus	50.38	47.29
CDX85164	Canola	nucleus	43.85	35.29
CDY45344	Canola	nucleus	31.92	34.73
CDX77461	Canola	nucleus	43.08	34.67
Solyc08g059700.1.1	Tomato	nucleus	43.46	33.33
CDY18077	Canola	nucleus	41.92	33.13
PGSC0003DMT400082721	Potato	nucleus	43.46	31.83
GSMUA_Achr11P...	Banana	nucleus	45.77	31.15
GSMUA_Achr6P20490_001	Banana	mitochondrion	44.62	30.69
VIT_04s0008g05520.t01	Wine grape	nucleus	52.31	30.16
CDY45343	Canola	nucleus	2.69	23.33

Protein Annotations

EnsemblPlants:CDY13480	EnsemblPlantsGene:GSBRNA2T00077782001	Gene3D:1.10.246.20	GO:A0A078FGA3	ncoils:Coil	PANTHER:PTHR35300
PANTHER:PTHR35300:SF1	ProteinID:CDY13480	ProteinID:CDY13480.1	SEG:seg	UniParc:UPI0002540FEE	UniProt:A0A078FGA3
MapMan:15.5.53.5.2	:	:	:	:	:

Description

BnaA03g51980DBnaA03g51980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGA3]

Coordinates

chrLK032035:+:588095..589318

Molecular Weight (calculated)

29388.1 Da

IEP (calculated)

9.084

GRAVY (calculated)

-0.603

Length

260 amino acids

Sequence
(BLAST)

001: MPRPGPRPYD CIRRAWHSDT HQPMRGLLIQ EIFRIVCEIH SQSTKKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDLTT LLDRANDAIN TIIRLDETTE
101: TGDYLQPCIE AALHLGCTPR KASRSQRNIN PRCYLSQDST KLDNILSPQY QVFMKPNSFA PKTLPVMTFH NDVQVKKCPF SKYSSYPLCY SLRVPSLPVN
201: VTDSCKSNKN SRLVSVKDAT NGIAFGGCDL SLRLGPLGDD TRSPTQKRSK LSSSNNNNKS

Best Arabidopsis Sequence Match ( AT4G32295.1 )
(BLAST)

001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN

Arabidopsis Description

Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.