CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24006
KRH27971
KRH28317
KRH29310
KRH77168
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32295.1	KRH24006	AT3G48150.1	21798944
AT4G32295.1	KRH27971	AT3G48150.1	21798944
AT4G32295.1	KRH29310	AT3G48150.1	21798944
AT4G32295.1	KRH77487	AT3G48150.1	21798944
AT4G32295.1	KRH28317	AT3G49690.1	21798944
AT4G32295.1	KRH77168	AT3G49690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61761	Soybean	nucleus	88.81	89.45
AT4G32295.1	Thale cress	cytosol	45.85	53.36
CDX72353	Canola	cytosol	44.04	50.41
Bra023956.1-P	Field mustard	cytosol	47.29	50.38
CDY13480	Canola	cytosol	47.29	50.38
CDX75234	Canola	cytosol	45.85	49.8
CDX68833	Canola	nucleus	46.21	49.61
Bra011335.1-P	Field mustard	nucleus	46.21	48.3
KRH54950	Soybean	nucleus	41.52	34.12
Solyc08g059700.1.1	Tomato	nucleus	41.16	33.63
VIT_04s0008g05520.t01	Wine grape	nucleus	53.07	32.59
PGSC0003DMT400082721	Potato	nucleus	41.52	32.39
GSMUA_Achr6P20490_001	Banana	mitochondrion	41.88	30.69
GSMUA_Achr11P...	Banana	nucleus	42.24	30.63
KRH20129	Soybean	mitochondrion, nucleus	43.32	29.78
KRH03673	Soybean	mitochondrion, nucleus	42.96	28.2

Protein Annotations

EMBL:ACUP02003419	EnsemblPlants:KRH52430	EnsemblPlantsGene:GLYMA_06G067900	EntrezGene:100791147	Gene3D:1.10.246.20	ncoils:Coil
PANTHER:PTHR35300	PANTHER:PTHR35300:SF1	ProteinID:KRH52430	ProteinID:KRH52430.1	SEG:seg	UniParc:UPI000233A2BC
UniProt:K7KTI2	MapMan:15.5.53.5.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:5191662..5195738

Molecular Weight (calculated)

30852.4 Da

IEP (calculated)

8.624

GRAVY (calculated)

-0.703

Length

277 amino acids

Sequence
(BLAST)

001: MPRPGSKPYD CVKRAWHSEI HQPIRGTLIQ EIFRVVNEIH GSSTKKNKEY QEKLPVVVLR AEEIIYSKAN SEAEYMDLKT LLERTNDAID TIIRRDEHTE
101: TGEYLCPCIE AALSLGCSLT KATRSQRNNQ RCYLSRSTEE VPKLSHGTLL NNPNTKDHNN TKSQYVSENV PSASKKQCVE HQAPPKLCSV YPLYYGNNNN
201: NIQHDNSQHH HHGFKVSHVS VSHTGGPALV GGGGARNLLA NNLKNSSSGG SQLFIIKGDF VNPCTQKCDL SLRLGPP

Best Arabidopsis Sequence Match ( AT4G32295.1 )
(BLAST)

001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN

Arabidopsis Description

Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.