Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27971 | Soybean | nucleus | 96.19 | 96.36 |
| VIT_07s0130g00490.t01 | Wine grape | cytosol | 87.02 | 87.17 |
| KRH24006 | Soybean | cytosol | 87.72 | 86.08 |
| VIT_07s0031g02330.t01 | Wine grape | cytosol | 83.91 | 84.06 |
| Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 80.28 | 80.56 |
| PGSC0003DMT400063189 | Potato | cytosol | 75.61 | 80.33 |
| Bra033769.1-P | Field mustard | nucleus | 75.09 | 75.09 |
| CDY70805 | Canola | nucleus | 38.41 | 73.75 |
| AT3G48150.1 | Thale cress | cytosol | 73.7 | 73.58 |
| Bra018081.1-P | Field mustard | cytosol | 73.53 | 73.4 |
| CDY58070 | Canola | cytosol | 62.8 | 73.33 |
| CDY36901 | Canola | cytosol | 60.9 | 70.26 |
| CDY44976 | Canola | cytosol | 60.73 | 69.5 |
| KRH29310 | Soybean | cytosol | 38.06 | 68.75 |
| GSMUA_Achr11P... | Banana | cytosol | 70.42 | 67.38 |
| CDY58069 | Canola | nucleus | 51.9 | 67.26 |
| Os02t0656300-01 | Rice | cytosol | 68.51 | 66.33 |
| TraesCS6B01G273900.1 | Wheat | cytosol | 68.51 | 66.11 |
| TraesCS6D01G233200.1 | Wheat | cytosol | 68.34 | 65.94 |
| TraesCS6A01G251400.1 | Wheat | cytosol | 68.34 | 65.94 |
| Zm00001d017475_P002 | Maize | cytosol | 67.47 | 65.11 |
| EES07517 | Sorghum | cytosol | 67.47 | 65.0 |
| HORVU0Hr1G027080.4 | Barley | plastid | 63.15 | 60.83 |
| HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 68.17 | 60.71 |
| Os06t0679100-00 | Rice | plastid | 15.92 | 51.69 |
| KRH18292 | Soybean | nucleus | 17.82 | 13.61 |
| KRG93804 | Soybean | cytosol | 17.65 | 13.47 |
| KRH01476 | Soybean | cytosol | 17.47 | 13.36 |
| KRH41728 | Soybean | extracellular, vacuole | 0.87 | 10.64 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100789971 | MapMan:13.3.4.1.1.2.4 | EMBL:ACUP02000673 | InterPro:APC8 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_01G216500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030071 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:K7K553 |
| EnsemblPlants:KRH77487 | ProteinID:KRH77487 | ProteinID:KRH77487.1 | PFAM:PF04049 | PFAM:PF13176 | PFAM:PF13181 |
| PFAM:PF13414 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF10 | SMART:SM00028 |
| SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI0002337502 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:-:54690425..54694541
Molecular Weight (calculated)
67144.9 Da
IEP (calculated)
6.585
GRAVY (calculated)
-0.481
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKESCRSE LRIAIRQLSD RCLYCASKWA AEQLVGIEQD PAKFTPSNTR FQRGSSSIRR KYKTHEIAGT PSAGVSYVAT PVMEEDELVD GDFYLLAKSY
101: FDCREYKRAA RVLRDQNGRK SVFLRCYALY LAGEKRKEEE MIELEGPLGK SDAVNHELVS LERELSTLRK NGKVDAFGLY LYGLVLKQKG SENLARTVLV
201: ESVNSYPWNW NAWTELQSLC KTVDILNSLN LNSHWMKDFF LASVYQELRM HNDSLSKYEY LLGTFSNSNY IQAQIAKAQY SLREFDQVEA IFEELLSNDP
301: YRVEDMDMYS NVLYAKECFS ALSYLAHRVF MTDKYRPESC CIVGNYYSLK GQHEKSVVYF RRALKLNKNF LLAWTLMGHE FVEMKNTPAA VDAYRRAVDI
401: DPRDYHAWYG LGQAYEMMGM PFYVLNYFKK SVFLQPNDSR LWIAMAQCYE TDQLRMLDEA IKCYRRAANC NDREAIALHN LAKLHSELGC PEEAAFYYKK
501: DLERMESEER EGPKMVEALL YLAKYYRAQK SFEEAEIYCT RLLDYTGPER ETAKSILRGM QSTQSNFPSM DVEHFPPS
101: FDCREYKRAA RVLRDQNGRK SVFLRCYALY LAGEKRKEEE MIELEGPLGK SDAVNHELVS LERELSTLRK NGKVDAFGLY LYGLVLKQKG SENLARTVLV
201: ESVNSYPWNW NAWTELQSLC KTVDILNSLN LNSHWMKDFF LASVYQELRM HNDSLSKYEY LLGTFSNSNY IQAQIAKAQY SLREFDQVEA IFEELLSNDP
301: YRVEDMDMYS NVLYAKECFS ALSYLAHRVF MTDKYRPESC CIVGNYYSLK GQHEKSVVYF RRALKLNKNF LLAWTLMGHE FVEMKNTPAA VDAYRRAVDI
401: DPRDYHAWYG LGQAYEMMGM PFYVLNYFKK SVFLQPNDSR LWIAMAQCYE TDQLRMLDEA IKCYRRAANC NDREAIALHN LAKLHSELGC PEEAAFYYKK
501: DLERMESEER EGPKMVEALL YLAKYYRAQK SFEEAEIYCT RLLDYTGPER ETAKSILRGM QSTQSNFPSM DVEHFPPS
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.