CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRH16959
KRH53667
KRH64261
KRH65920
KRH67075
KRH75713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15160.1	KRH65920	AT5G02150.1	21798944
AT3G15160.1	KRH75713	AT5G02150.1	21798944
AT3G15160.1	KRG95394	AT5G22355.1	21798944
AT3G15160.1	KRH67075	AT5G22355.1	21798944
AT3G15160.1	KRH16959	AT5G24660.1	21798944
AT3G15160.1	KRH53667	AT5G24660.1	21798944
AT3G15160.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0177g00260.t01	Wine grape	cytosol, peroxisome, plasma membrane	80.35	79.79
AT3G15160.1	Thale cress	cytosol	72.04	72.42
CDX75812	Canola	cytosol	71.86	72.24
CDX82445	Canola	cytosol	71.86	72.24
Bra001585.1-P	Field mustard	cytosol	71.68	72.06
PGSC0003DMT400037306	Potato	cytosol, mitochondrion, plastid	35.04	72.0
Solyc10g006410.2.1	Tomato	cytosol	72.21	71.83
GSMUA_Achr3P23110_001	Banana	cytosol, extracellular	23.72	70.9
GSMUA_Achr3P23120_001	Banana	cytosol	48.67	67.73
PGSC0003DMT400037304	Potato	cytosol	24.25	67.49
Os04t0626900-01	Rice	plasma membrane	65.31	64.51
TraesCS2A01G473900.1	Wheat	cytosol	65.13	64.34
TraesCS2D01G473600.2	Wheat	cytosol	64.96	64.16
TraesCS2B01G497400.1	Wheat	plastid	64.78	63.99
EES11468	Sorghum	cytosol, peroxisome, plasma membrane, plastid	64.42	63.53
HORVU2Hr1G106960.1	Barley	plastid	64.96	60.96
Zm00001d002235_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	61.59	52.25

Protein Annotations

EntrezGene:100796067	MapMan:22.5.5.4.1	EMBL:ACUP02004037	InterPro:AP5Z1	InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_06G271800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0016020	GO:GO:0044599	UniProt:I1KEI7	EnsemblPlants:KRH55679	ProteinID:KRH55679	ProteinID:KRH55679.1
PFAM:PF14764	PANTHER:PTHR12181	PANTHER:PTHR12181:SF29	SUPFAM:SSF48371	UniParc:UPI000233A16D	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:46201181..46210794

Molecular Weight (calculated)

62753.7 Da

IEP (calculated)

5.544

GRAVY (calculated)

0.010

Length

565 amino acids

Sequence
(BLAST)

001: MSERDIAWDF HLRKLSASGR DSNTANDPAS DSSLLPSVKK LHEICKNEYS EDLVARVYPS INKIFQRAVA SLSQSRTSNG LLLLEILQFY LDFGEVVLHD
101: ADPSLRTFFR LCLSREFADP VVAEATLEFL IINKKKLLTS FPNLLPQFFP LLLKLVAWNG ERLEKLFLKA FPGLMSPGSF ISLFPSLVDL PILVVALEKV
201: EKSSGPLIGS SIASIQKNTA PKMLLALMDE AYTGSTIEDG GGDSESEDNS AIDVADPFFL ELLKDENDGI AERPWSSPVM AAILQASVNS PYSDRLKAVL
301: NMAPHLLDVY FSIALHTVNN SLICALIPLL MSRFATIFPD KIFSYEVRKR LLEFMLSTFQ CSPNFIALLK KPIMDRLGEA YDSPEKTELA LQLCWAIGEH
401: GGGGGSHKDE ARELFESLEL LLYENLSSSR VGMTQEVSDE DTYRRSSQSR LLCFVVTAIA KLATYHRELL PRARVSLGKV ARSRISDPRV WRRACDFLGL
501: MKDPAICASI LGPSRPAQGT TQKVGSINWS EGSTKMIAHI PFYILGEQEG PPFHDFSFSD IIPSI

Best Arabidopsis Sequence Match ( AT3G15160.1 )
(BLAST)

001: MSDQEGDWDF YLRILSNSAR DSTDPASDPS ILQSVKKLHG FCKMEKSDDL VARIYPQFNK VFHRSVASLS QSESGASKGL LLLAILQFFL DFGDMVLHDS
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLV VNQRKLLASF PNLLPQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSIVDLP ILVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPT LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKIFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDVAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLVYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV KSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSEKRF PGTVNWSEGG QKMVAHIPFH ILSEQGGPPF HDFAFSDIIP KN

Arabidopsis Description

AP-5 complex subunit zeta-1 [Source:UniProtKB/TrEMBL;Acc:Q8H1F1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.