Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G095500.1 | |
| TraesCS4B01G208900.3 | |
| TraesCS4D01G209700.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15160.1 | TraesCS4A01G095500.1 | AT5G02150.1 | 21798944 |
| AT3G15160.1 | TraesCS4B01G208900.3 | AT5G02150.1 | 21798944 |
| AT3G15160.1 | TraesCS4D01G209700.2 | AT5G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G473600.2 | Wheat | cytosol | 99.13 | 99.13 |
| TraesCS2A01G473900.1 | Wheat | cytosol | 98.25 | 98.25 |
| HORVU2Hr1G106960.1 | Barley | plastid | 97.38 | 92.52 |
| Os04t0626900-01 | Rice | plasma membrane | 91.08 | 91.08 |
| EES11468 | Sorghum | cytosol, peroxisome, plasma membrane, plastid | 88.81 | 88.66 |
| Zm00001d002235_P002 | Maize | cytosol, peroxisome, plasma membrane, plastid | 85.66 | 73.57 |
| GSMUA_Achr3P23110_001 | Banana | cytosol, extracellular | 24.13 | 73.02 |
| VIT_19s0177g00260.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 68.71 | 69.07 |
| PGSC0003DMT400037306 | Potato | cytosol, mitochondrion, plastid | 31.82 | 66.18 |
| KRH55679 | Soybean | cytosol, peroxisome, plasma membrane | 63.99 | 64.78 |
| CDX75812 | Canola | cytosol | 62.94 | 64.06 |
| Bra001585.1-P | Field mustard | cytosol | 62.41 | 63.52 |
| CDX82445 | Canola | cytosol | 62.41 | 63.52 |
| AT3G15160.1 | Thale cress | cytosol | 62.24 | 63.35 |
| Solyc10g006410.2.1 | Tomato | cytosol | 61.89 | 62.32 |
| PGSC0003DMT400037304 | Potato | cytosol | 19.58 | 55.17 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G497400.1 | EnsemblPlantsGene:TraesCS2B01G497400 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0016020 | GO:GO:0044599 | InterPro:AP5Z1 | InterPro:ARM-type_fold |
| PANTHER:PTHR12181 | PANTHER:PTHR12181:SF29 | PFAM:PF14764 | SEG:seg | SUPFAM:SSF48371 | MapMan:22.5.5.4.1 |
Description
No Description!
Coordinates
chr2B:+:694048788..694053612
Molecular Weight (calculated)
62126.3 Da
IEP (calculated)
6.670
GRAVY (calculated)
0.073
Length
572 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPKLAAGD GSYDFHLRSL SAASRDSAAA ADPASDPNLL QSVRMVFQMC KVAKGANDEM VARAFPVMNK LFQRCAAAPT LSTASTGVLL LTILQFFLDF
101: GEAVLHDADG SLKTFFRSCL SREFSDPIVA ERTLEFLIAN KTKILNCFPT LVPQFFPLLL KLIASNGDRL DKKFSEVIPL MMSAGSFLPL FLSLMDLPML
201: VVALEKVERS SGTLIGSSLA TIQKSAAPEM LLALMDEAYT GSSIEDQSGN SGSDDSGRLD LADPMFLDLL KDENDGIAAK HWTSPTISST LQAALNSPQS
301: DRLKQSLKMA PRFLTVYFAT ALRDVNNSLL CALIPVAMSR YAAMFPDKEF SFEVRKKLSD FLLAAFQRSP DIIALLKKPI TDRLGEAHGN PAKMELALHL
401: CWAIGEHGAG GIKHKDVARE LFENLELLLY ENLATSRLGL SQDPGFDSMG ASSRKSSQAR LLCFVVTAIA KLATCHNELL PRARVSLAKV ARSRTSDMRV
501: WQRACDYLGL MNEPAICLSV LGPSTAQGNG PGIVNWSEGG TKMVAHIPFY LLAEQKGPPS HDFSYADLLP AE
101: GEAVLHDADG SLKTFFRSCL SREFSDPIVA ERTLEFLIAN KTKILNCFPT LVPQFFPLLL KLIASNGDRL DKKFSEVIPL MMSAGSFLPL FLSLMDLPML
201: VVALEKVERS SGTLIGSSLA TIQKSAAPEM LLALMDEAYT GSSIEDQSGN SGSDDSGRLD LADPMFLDLL KDENDGIAAK HWTSPTISST LQAALNSPQS
301: DRLKQSLKMA PRFLTVYFAT ALRDVNNSLL CALIPVAMSR YAAMFPDKEF SFEVRKKLSD FLLAAFQRSP DIIALLKKPI TDRLGEAHGN PAKMELALHL
401: CWAIGEHGAG GIKHKDVARE LFENLELLLY ENLATSRLGL SQDPGFDSMG ASSRKSSQAR LLCFVVTAIA KLATCHNELL PRARVSLAKV ARSRTSDMRV
501: WQRACDYLGL MNEPAICLSV LGPSTAQGNG PGIVNWSEGG TKMVAHIPFY LLAEQKGPPS HDFSYADLLP AE
001: MSDQEGDWDF YLRILSNSAR DSTDPASDPS ILQSVKKLHG FCKMEKSDDL VARIYPQFNK VFHRSVASLS QSESGASKGL LLLAILQFFL DFGDMVLHDS
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLV VNQRKLLASF PNLLPQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSIVDLP ILVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPT LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKIFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDVAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLVYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV KSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSEKRF PGTVNWSEGG QKMVAHIPFH ILSEQGGPPF HDFAFSDIIP KN
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLV VNQRKLLASF PNLLPQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSIVDLP ILVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPT LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKIFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDVAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLVYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV KSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSEKRF PGTVNWSEGG QKMVAHIPFH ILSEQGGPPF HDFAFSDIIP KN
Arabidopsis Description
AP-5 complex subunit zeta-1 [Source:UniProtKB/TrEMBL;Acc:Q8H1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.