Factsheet for TraesCS4D01G209700.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi, plastid

Predictor Summary:

golgi 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, golgi, mitochondrion, plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G263300.1
TraesCS1B01G273900.1
TraesCS1D01G263400.1
TraesCS3A01G405000.1
TraesCS3B01G438700.1
TraesCS3D01G400400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02150.1	TraesCS1A01G263300.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS1B01G273900.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS1D01G263400.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS3A01G405000.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS3B01G438700.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS3D01G400400.1	AT4G10040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G208900.3	Wheat	mitochondrion	96.12	96.59
HORVU4Hr1G060150.6	Barley	mitochondrion	89.32	96.34
TraesCS4A01G095500.1	Wheat	mitochondrion	83.01	85.71
Os03t0271400-01	Rice	cytosol, extracellular, mitochondrion, plastid	79.13	84.9
EER92486	Sorghum	cytosol, extracellular, mitochondrion, plastid	78.64	84.38
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	77.43	82.86
VIT_08s0007g00740.t01	Wine grape	nucleus	51.21	65.53
GSMUA_Achr10P...	Banana	cytosol	56.55	59.74
AT3G53800.1	Thale cress	cytosol	52.43	59.5
CDY41617	Canola	cytosol	52.91	59.4
Bra029761.1-P	Field mustard	cytosol	52.91	59.4
AT3G09350.1	Thale cress	cytosol	52.18	59.23
CDY44699	Canola	cytosol	52.67	59.13
CDX73975	Canola	cytosol	49.76	57.26
KRH75713	Soybean	cytosol	53.64	57.25
CDY65836	Canola	cytosol	50.24	57.02
Bra007027.1-P	Field mustard	cytosol	50.24	57.02
AT5G02150.1	Thale cress	cytosol	44.66	56.79
Bra001314.1-P	Field mustard	cytosol	49.27	56.7
CDY07920	Canola	cytosol	49.27	56.7
Solyc09g011030.2.1	Tomato	cytosol	54.61	56.68
CDX73524	Canola	cytosol	49.76	56.47
TraesCS5D01G496000.1	Wheat	cytosol	52.18	56.43
PGSC0003DMT400022748	Potato	nucleus	54.37	56.42
KRH65920	Soybean	cytosol	51.94	55.73
GSMUA_Achr7P15030_001	Banana	extracellular	18.93	51.32
CDX85186	Canola	mitochondrion	9.95	26.28
TraesCS5D01G303400.1	Wheat	golgi	22.09	22.09

Protein Annotations

EnsemblPlants:TraesCS4D01G209700.2	EnsemblPlantsGene:TraesCS4D01G209700	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR19316	PANTHER:PTHR19316:SF21	SEG:seg	SUPFAM:SSF48371
MapMan:19.1.5.4	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:360953251..360956001

Molecular Weight (calculated)

45529.6 Da

IEP (calculated)

5.220

GRAVY (calculated)

-0.154

Length

412 amino acids

Sequence
(BLAST)

001: MAGDRMSWAR LLKWSLSYMD GARPSRDIRW GEGKWRLVIS SAVFIWVAAE ASLWCAVLCS EEERRWLAEA VERHMAEDVV GRLREIALLM RTPLSVLEAQ
101: GITPEDIEDL LAELQVHVES IDIANDLHSV GGLVPVIRYL RNTNARIRAK VADVVTTVVQ NNPTSQQLVM EASGFEPLVS NFTSDPDLTA RIKALGALSS
201: LIRNNKPGVA AFRLANGYAG LRDALNSESA RFQRKALSLT HYLLSESHSD CSVFAQLGFP RLMMRLVSSD DSGVREAALG GLLELAKDTT LGNRSLLADQ
301: DRLRRLLWGR IQSIRMMAPE DLDAAREERQ LVDSLWIACY HEPSTLNREG LVVLPGEESF EQPPDVAGRF FEPLRRAPLQ RAAPSPDERS DPGNGTLGGI
401: MLLLGPAPGN SE

Best Arabidopsis Sequence Match ( AT3G09350.1 )
(BLAST)

001: MAKDGPNWDG LLKWSLSHAD GTRPTRQLSE EDRKWFMEAM QSQTVDVVKR MKEITLVMQT PEQVLVEHGV TPEDIQDLLD ELQEHVESID MANDLHSIGG
101: LVPLLSFLKN SHANIRAKAA DVVSTIVQNN PRSQELVMET NALESLLSNF TSDTDIHART QALGAISSLI RHNKPGVTAF KLANGYAGLR DALASDSVRF
201: QRKALNLLQY LLQEDDSDRS IATGLGFPRV MMHLASSDDA EIREAALRGL LELSREKNDG SSSIDKSDEK LRQLLEERIK GITLMSQEDL ETVKEERQLV
301: DLLWSICYNE PSSLREKGLV VLPGEDALPP DVASKLFEPP LRASAANRNA TEKKDEPMKL LGP

Arabidopsis Description

Fes1AFes1A [Source:UniProtKB/TrEMBL;Acc:Q84J81]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.