CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73524	Canola	cytosol	50.64	21.76
CDY65836	Canola	cytosol	49.36	21.21
Bra007027.1-P	Field mustard	cytosol	48.72	20.94
AT3G53800.1	Thale cress	cytosol	43.59	18.73
VIT_08s0007g00740.t01	Wine grape	nucleus	33.33	16.15
KRH65920	Soybean	cytosol	35.9	14.58
CDY07920	Canola	cytosol	33.33	14.53
KRH75713	Soybean	cytosol	35.9	14.51
CDX73975	Canola	cytosol	32.69	14.25
CDY44699	Canola	cytosol	33.33	14.17
PGSC0003DMT400022748	Potato	nucleus	35.9	14.11
CDY41617	Canola	cytosol	32.69	13.9
Solyc09g011030.2.1	Tomato	cytosol	35.26	13.85
GSMUA_Achr10P...	Banana	cytosol	33.33	13.33
EER92486	Sorghum	cytosol, extracellular, mitochondrion, plastid	27.56	11.2
Os03t0271400-01	Rice	cytosol, extracellular, mitochondrion, plastid	27.56	11.2
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	26.92	10.91
HORVU4Hr1G060150.6	Barley	mitochondrion	25.64	10.47
TraesCS4D01G209700.2	Wheat	cytosol, golgi, plastid	26.28	9.95
TraesCS4B01G208900.3	Wheat	mitochondrion	25.64	9.76
TraesCS4A01G095500.1	Wheat	mitochondrion	21.15	8.27
CDX78051	Canola	extracellular	14.74	6.05
CDX73670	Canola	extracellular	14.1	5.79
GSMUA_Achr7P15030_001	Banana	extracellular	2.56	2.63

Protein Annotations

EnsemblPlants:CDX85186	EnsemblPlantsGene:GSBRNA2T00142794001	InterPro:Nucleotide_exch_fac_Fes1	PANTHER:PTHR19316	PANTHER:PTHR19316:SF27	PFAM:PF08609
ProteinID:CDX85186	ProteinID:CDX85186.1	SEG:seg	UniParc:UPI0004EEE08A	MapMan:35.2	:

Description

BnaC07g24970D

Coordinates

chrLK031841:-:32884..34831

Molecular Weight (calculated)

17918.4 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.661

Length

156 amino acids

Sequence
(BLAST)

001: MSGWRRGLVF RPSRLLSRIL SSTCNDDDKV CLPWWLRSGS SDGASPFPPF EVRTSFVLQN KIPEREREKP RRCLKRMPHS DGASPSRPFS EEDRQWFMEA
101: MQGHTIDSIS RMKQISQIMK MPEHLLDSQG VTTSDLEGML DELQEHVESI DLANGL

Best Arabidopsis Sequence Match ( AT3G53800.1 )
(BLAST)

001: MANNGPNWDG LLKWSLSHSD GASSSSRISE EDRQWFVEAM QAHTIDSISR MKVISQIMKM PEQVLEAQGV TPDDLEGMLA ELQEHVESID LANDLHSIGG
101: LVPLLSYLKN SNAKIRAKSA DVLTTVVQNN PRSQQLVMEA NGFEPLLTNF IADPDIRVRT KALGAISSLI RNNQPGITAF RLANGYAGLR DALVSDTVRF
201: QRKALNLLHY LLQESNSDCK IVRDLGFPRI MIHLASNQDF EVREFALRGL LELAREESVR NLDRGDVNLR QLLEERTRRI IVMSDEDLCA AREERQLVDS
301: LWTVCYDEPS LLRERGLVYL PSDDELAPDV VRDRFEPPLR AWAARRHDET SESPVPLLLG PAP

Arabidopsis Description

Fes1BFes1B [Source:UniProtKB/TrEMBL;Acc:Q9M346]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.