CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03996
EES18250

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02150.1	EES03996	AT4G10040.1	21798944
AT5G02150.1	EES18250	AT4G10040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	96.61	96.36
Os03t0271400-01	Rice	cytosol, extracellular, mitochondrion, plastid	86.98	86.98
HORVU4Hr1G060150.6	Barley	mitochondrion	83.85	84.29
TraesCS4B01G208900.3	Wheat	mitochondrion	84.9	79.51
TraesCS4D01G209700.2	Wheat	cytosol, golgi, plastid	84.38	78.64
TraesCS4A01G095500.1	Wheat	mitochondrion	77.6	74.69
VIT_08s0007g00740.t01	Wine grape	nucleus	55.47	66.15
CDY41617	Canola	cytosol	59.11	61.85
AT3G53800.1	Thale cress	cytosol	58.33	61.71
CDY44699	Canola	cytosol	58.85	61.58
Bra029761.1-P	Field mustard	cytosol	58.59	61.31
GSMUA_Achr10P...	Banana	cytosol	61.98	61.03
AT3G09350.1	Thale cress	cytosol	56.77	60.06
CDY65836	Canola	cytosol	56.77	60.06
Bra007027.1-P	Field mustard	cytosol	56.77	60.06
Bra001314.1-P	Field mustard	cytosol	55.73	59.78
CDX73975	Canola	cytosol	55.73	59.78
KXG37246	Sorghum	cytosol, nucleus, plasma membrane	57.81	59.68
CDX73524	Canola	cytosol	56.25	59.5
CDY07920	Canola	cytosol	55.21	59.22
KRH75713	Soybean	cytosol	58.85	58.55
Solyc09g011030.2.1	Tomato	cytosol	60.16	58.19
PGSC0003DMT400022748	Potato	nucleus	59.64	57.68
KRH65920	Soybean	cytosol	57.55	57.55
AT5G02150.1	Thale cress	cytosol	47.66	56.48
GSMUA_Achr7P15030_001	Banana	extracellular	19.79	50.0
CDX85186	Canola	mitochondrion	11.2	27.56
OQU89185	Sorghum	cytosol	16.15	26.72
EER96516	Sorghum	extracellular, golgi	22.92	21.31
EER97031	Sorghum	extracellular, golgi	22.14	20.88

Protein Annotations

EnsemblPlants:EER92486	EnsemblPlantsGene:SORBI_3001G423100	EntrezGene:8081516	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Nucleotide_exch_fac_Fes1	PANTHER:PTHR19316	PANTHER:PTHR19316:SF21
PFAM:PF08609	ProteinID:EER92486	ProteinID:EER92486.1	RefSeq:XP_002465488.1	SEG:seg	SUPFAM:SSF48371
unigene:Sbi.10285	UniParc:UPI0001A82CEA	UniProt:C5WQ16	MapMan:19.1.5.4	:	:

Description

hypothetical protein

Coordinates

chr1:+:70367019..70370653

Molecular Weight (calculated)

42319.5 Da

IEP (calculated)

5.644

GRAVY (calculated)

-0.300

Length

384 amino acids

Sequence
(BLAST)

001: MAGDRLSWAG LLKWSLSYVD GAGPSRAVSE EERRWLAEAV ERHMMMDVVS RMREIALLMS TPPAVLEAQG ITHDDIEDLL SELQVHVESI DMANDLHSVG
101: GLVPVIKYLR NSNARIRAKA ADVVTTVVQN NPTSQQLVME ASGFEPLLSN FRSDPDLTAR IKALGALSSL IRNNKPGVSA FRLANGYTGL RDALNSESAR
201: FQRKALSLTH YLLSESHSDC SVFAQLGFPH LMMRLASSDD SGVREAALGG LLELARDTTL GNRSLLAEHD RLRRLLCGRM ESIRTMTPED LDAAREERQL
301: VDSLWITCYH EPSMLRNEGL LVLPGEESFE QPPDVAGRFF EPMRRASARR TPPVDRSDPG DETGGGMVLL LGPAPDGRSN SPRH

Best Arabidopsis Sequence Match ( AT3G09350.1 )
(BLAST)

001: MAKDGPNWDG LLKWSLSHAD GTRPTRQLSE EDRKWFMEAM QSQTVDVVKR MKEITLVMQT PEQVLVEHGV TPEDIQDLLD ELQEHVESID MANDLHSIGG
101: LVPLLSFLKN SHANIRAKAA DVVSTIVQNN PRSQELVMET NALESLLSNF TSDTDIHART QALGAISSLI RHNKPGVTAF KLANGYAGLR DALASDSVRF
201: QRKALNLLQY LLQEDDSDRS IATGLGFPRV MMHLASSDDA EIREAALRGL LELSREKNDG SSSIDKSDEK LRQLLEERIK GITLMSQEDL ETVKEERQLV
301: DLLWSICYNE PSSLREKGLV VLPGEDALPP DVASKLFEPP LRASAANRNA TEKKDEPMKL LGP

Arabidopsis Description

Fes1AFes1A [Source:UniProtKB/TrEMBL;Acc:Q84J81]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.