Factsheet for GSMUA_Achr7P15030_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 3
extracellular 3
peroxisome 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus, peroxisome, plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P01400_001
GSMUA_Achr6P18470_001
GSMUA_Achr7P23550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02150.1	GSMUA_Achr11P...	AT4G10040.1	21798944
AT5G02150.1	GSMUA_Achr5P01400_001	AT4G10040.1	21798944
AT5G02150.1	GSMUA_Achr6P18470_001	AT4G10040.1	21798944
AT5G02150.1	GSMUA_Achr7P23550_001	AT4G10040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g00740.t01	Wine grape	nucleus	58.55	27.64
GSMUA_Achr10P...	Banana	cytosol	60.53	23.59
AT5G02150.1	Thale cress	cytosol	49.34	23.15
CDY07920	Canola	cytosol	53.95	22.91
KRH65920	Soybean	cytosol	56.58	22.4
AT3G53800.1	Thale cress	cytosol	53.29	22.31
KRH75713	Soybean	cytosol	56.58	22.28
CDY41617	Canola	cytosol	53.29	22.07
CDX73975	Canola	cytosol	51.97	22.07
Bra029761.1-P	Field mustard	cytosol	52.63	21.8
Bra001314.1-P	Field mustard	cytosol	51.32	21.79
AT3G09350.1	Thale cress	cytosol	51.97	21.76
CDY65836	Canola	cytosol	51.97	21.76
Bra007027.1-P	Field mustard	cytosol	51.97	21.76
CDX73524	Canola	cytosol	51.97	21.76
Solyc09g011030.2.1	Tomato	cytosol	56.58	21.66
PGSC0003DMT400022748	Potato	nucleus	56.58	21.66
CDY44699	Canola	cytosol	51.97	21.53
Os03t0271400-01	Rice	cytosol, extracellular, mitochondrion, plastid	51.32	20.31
HORVU4Hr1G060150.6	Barley	mitochondrion	50.66	20.16
EER92486	Sorghum	cytosol, extracellular, mitochondrion, plastid	50.0	19.79
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	50.0	19.74
TraesCS4A01G095500.1	Wheat	mitochondrion	50.66	19.3
TraesCS4D01G209700.2	Wheat	cytosol, golgi, plastid	51.32	18.93
TraesCS4B01G208900.3	Wheat	mitochondrion	50.66	18.78
GSMUA_Achr11P...	Banana	extracellular	21.05	8.06
GSMUA_Achr8P20740_001	Banana	cytosol	1.32	3.57
CDX85186	Canola	mitochondrion	2.63	2.56

Protein Annotations

EnsemblPlants:GSMUA_Achr7P15030_001	EnsemblPlants:GSMUA_Achr7T15030_001	EnsemblPlantsGene:GSMUA_Achr7G15030_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR19316	PANTHER:PTHR19316:SF27	SUPFAM:SSF48371
UniParc:UPI0002956B09	UniProt:M0THP0	MapMan:35.2	:	:	:

Description

Putative uncharacterized protein Sb01g003070 [Source:GMGC_GENE;Acc:GSMUA_Achr7G15030_001]

Coordinates

chr7:-:12050720..12052025

Molecular Weight (calculated)

16528.9 Da

IEP (calculated)

6.927

GRAVY (calculated)

0.184

Length

152 amino acids

Sequence
(BLAST)

001: MYFLWRTCHS FCLNMPDLHS IGSLVPLFGY LKTSDAGIGA KDADVVTTIV QNNPRSQQLV MESLLSNFTS HPDLTVHTEA LGVISSLIQN NQAGIAAFDL
101: VNGYAVLGYA LCSERVKVSF LNLSYVSGGS TVVAKENKLK EVFQRRIEGI SG

Best Arabidopsis Sequence Match ( AT3G53800.2 )
(BLAST)

001: MQAHTIDSIS RMKVISQIMK MPEQVLEAQG VTPDDLEGML AELQEHVESI DLANDLHSIG GLVPLLSYLK NSNAKIRAKS ADVLTTVVQN NPRSQQLVME
101: ANGFEPLLTN FIADPDIRVR TKALGAISSL IRNNQPGITA FRLANGYAGL RDALVSDTVR FQRKALNLLH YLLQESNSDC KIVRDLGFPR IMIHLASNQD
201: FEVREFALRG LLELAREESV RNLDRGDVNL RQLLEERTRR IIVMSDEDLC AAREERQLVD SLWTVCYDEP SLLRERGLVY LPSDDELAPD VVRDRFEPPL
301: RAWAARRHDE TSESPVPLLL GPAP

Arabidopsis Description

Fes1BFes1B [Source:UniProtKB/TrEMBL;Acc:Q9M346]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.