CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44699	Canola	cytosol	97.82	97.82
Bra029761.1-P	Field mustard	cytosol	97.28	97.28
AT3G09350.1	Thale cress	cytosol	91.28	92.29
CDX73975	Canola	cytosol	86.92	89.11
CDY07920	Canola	cytosol	86.1	88.27
VIT_08s0007g00740.t01	Wine grape	nucleus	65.94	75.16
KRH75713	Soybean	cytosol	75.48	71.76
KRH65920	Soybean	cytosol	74.93	71.61
Solyc09g011030.2.1	Tomato	cytosol	77.38	71.54
PGSC0003DMT400022748	Potato	nucleus	77.38	71.54
GSMUA_Achr10P...	Banana	cytosol	71.12	66.92
CDY65836	Canola	cytosol	65.94	66.67
CDX73524	Canola	cytosol	65.12	65.84
Os03t0271400-01	Rice	cytosol, extracellular, mitochondrion, plastid	62.67	59.9
EER92486	Sorghum	cytosol, extracellular, mitochondrion, plastid	61.85	59.11
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	61.31	58.44
HORVU4Hr1G060150.6	Barley	mitochondrion	59.13	56.81
GSMUA_Achr7P15030_001	Banana	extracellular	22.07	53.29
TraesCS4B01G208900.3	Wheat	mitochondrion	59.13	52.93
TraesCS4D01G209700.2	Wheat	cytosol, golgi, plastid	59.4	52.91
TraesCS4A01G095500.1	Wheat	mitochondrion	55.04	50.63
CDX85186	Canola	mitochondrion	13.9	32.69
CDX73670	Canola	extracellular	23.43	22.63
CDX78051	Canola	extracellular	23.16	22.37

Protein Annotations

EnsemblPlants:CDY41617	EnsemblPlantsGene:GSBRNA2T00073270001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Nucleotide_exch_fac_Fes1	InterPro:TOG	ncoils:Coil	PANTHER:PTHR19316
PANTHER:PTHR19316:SF27	PFAM:PF08609	ProteinID:CDY41617	ProteinID:CDY41617.1	SEG:seg	SMART:SM01349
SUPFAM:SSF48371	UniParc:UPI0004EF0CAD	UniProt:A0A078HUW4	MapMan:19.1.5.4	:	:

Description

BnaC05g43540DBnaC05g43540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUW4]

Coordinates

chrLK032501:-:247916..249933

Molecular Weight (calculated)

40561.1 Da

IEP (calculated)

4.674

GRAVY (calculated)

-0.438

Length

367 amino acids

Sequence
(BLAST)

001: MAKDGPNWDG LLKWSLSHAD GTRPTRQLSE EDRKWFMEAM QSQTLDVVKR MKEITLVLQT PEQVLVEHGV TPDDIEDLLD ELQEHVESID MANDLHSIGG
101: LVPLLGFLKN SHANIRAKAA DVVSTIVQNN PRSQELVMEA NGLESLLSNF TSDADVHART QALSAISSLI RHNKPGVTAF KLANGYAGLR DAMASDSVRF
201: QRKALNLLQY LLQEDDSDRS IAAGLGFPRV MMHLASSDDA ETREAALRGL LELAREKNDG SGSSSIEKGD EKLRQLLEER IEGISLMSQE DLGTVKEERQ
301: LVDSLWRVCY NEPSSLREKG LLVLPGEDEL PPDVASKLFE PPLRASAANR NATEKKEEPI KLLGPAP

Best Arabidopsis Sequence Match ( AT3G09350.1 )
(BLAST)

001: MAKDGPNWDG LLKWSLSHAD GTRPTRQLSE EDRKWFMEAM QSQTVDVVKR MKEITLVMQT PEQVLVEHGV TPEDIQDLLD ELQEHVESID MANDLHSIGG
101: LVPLLSFLKN SHANIRAKAA DVVSTIVQNN PRSQELVMET NALESLLSNF TSDTDIHART QALGAISSLI RHNKPGVTAF KLANGYAGLR DALASDSVRF
201: QRKALNLLQY LLQEDDSDRS IATGLGFPRV MMHLASSDDA EIREAALRGL LELSREKNDG SSSIDKSDEK LRQLLEERIK GITLMSQEDL ETVKEERQLV
301: DLLWSICYNE PSSLREKGLV VLPGEDALPP DVASKLFEPP LRASAANRNA TEKKDEPMKL LGP

Arabidopsis Description

Fes1AFes1A [Source:UniProtKB/TrEMBL;Acc:Q84J81]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.