CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73975	Canola	cytosol	94.97	94.97
CDY41617	Canola	cytosol	88.27	86.1
CDY44699	Canola	cytosol	87.71	85.56
AT3G09350.1	Thale cress	cytosol	86.31	85.12
VIT_08s0007g00740.t01	Wine grape	nucleus	63.41	70.5
KRH75713	Soybean	cytosol	73.74	68.39
KRH65920	Soybean	cytosol	72.91	67.97
Solyc09g011030.2.1	Tomato	cytosol	74.58	67.25
PGSC0003DMT400022748	Potato	nucleus	74.58	67.25
GSMUA_Achr10P...	Banana	cytosol	70.39	64.62
CDY65836	Canola	cytosol	63.41	62.53
CDX73524	Canola	cytosol	63.13	62.26
Os03t0271400-01	Rice	cytosol, extracellular, mitochondrion, plastid	60.06	55.99
EER92486	Sorghum	cytosol, extracellular, mitochondrion, plastid	59.22	55.21
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	59.22	55.06
GSMUA_Achr7P15030_001	Banana	extracellular	22.91	53.95
HORVU4Hr1G060150.6	Barley	mitochondrion	56.42	52.88
TraesCS4D01G209700.2	Wheat	cytosol, golgi, plastid	56.7	49.27
TraesCS4B01G208900.3	Wheat	mitochondrion	56.42	49.27
TraesCS4A01G095500.1	Wheat	mitochondrion	53.07	47.62
CDX85186	Canola	mitochondrion	14.53	33.33
CDX73670	Canola	extracellular	23.18	21.84
CDX78051	Canola	extracellular	22.91	21.58

Protein Annotations

EnsemblPlants:CDY07920	EnsemblPlantsGene:GSBRNA2T00125120001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Nucleotide_exch_fac_Fes1	InterPro:TOG	ncoils:Coil	PANTHER:PTHR19316
PANTHER:PTHR19316:SF27	PFAM:PF08609	ProteinID:CDY07920	ProteinID:CDY07920.1	SMART:SM01349	SUPFAM:SSF48371
UniParc:UPI0004EE89CA	UniProt:A0A078F0F8	MapMan:19.1.5.4	:	:	:

Description

BnaC03g36030DBnaC03g36030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F0F8]

Coordinates

chrLK031982:+:108591..110505

Molecular Weight (calculated)

39273.5 Da

IEP (calculated)

4.555

GRAVY (calculated)

-0.283

Length

358 amino acids

Sequence
(BLAST)

001: MAKDGPNWDG LLKWSLSHAD GTQPTRQLSE EDRKWFTEAM QSQTVDVVKR MKEITLVMQT PEHVLVDHGV TPQDIEDLLD ELQEHVESID MANDLHSIGG
101: LIPLLGFLKN SHANIRAKAA DVVRTIVQNN PRSQELVMEA NGLESLLSNF TSDADVHVQT QALGAISSLI RHNKAGVTAF KLDNGYAGLR DALASDSVRF
201: QRKALNFLQY LLQEDVSDRS VATGLGFATV LIHLASSDDA ETREAALGVL LELAREKNDG RGCSSVELRQ LLEERIEGIS SMSHEDLETV KEERQLVDAL
301: WSVCYNEPSS LGEKGLLVLP GEDALPPDVA SKLLEPLLRA SAANGSATEK KEEPVKLL

Best Arabidopsis Sequence Match ( AT3G09350.1 )
(BLAST)

001: MAKDGPNWDG LLKWSLSHAD GTRPTRQLSE EDRKWFMEAM QSQTVDVVKR MKEITLVMQT PEQVLVEHGV TPEDIQDLLD ELQEHVESID MANDLHSIGG
101: LVPLLSFLKN SHANIRAKAA DVVSTIVQNN PRSQELVMET NALESLLSNF TSDTDIHART QALGAISSLI RHNKPGVTAF KLANGYAGLR DALASDSVRF
201: QRKALNLLQY LLQEDDSDRS IATGLGFPRV MMHLASSDDA EIREAALRGL LELSREKNDG SSSIDKSDEK LRQLLEERIK GITLMSQEDL ETVKEERQLV
301: DLLWSICYNE PSSLREKGLV VLPGEDALPP DVASKLFEPP LRASAANRNA TEKKDEPMKL LGP

Arabidopsis Description

Fes1AFes1A [Source:UniProtKB/TrEMBL;Acc:Q84J81]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.