Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002609 | |
| PGSC0003DMT400063997 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02150.1 | PGSC0003DMT400002609 | AT4G10040.1 | 21798944 |
| AT5G02150.1 | PGSC0003DMT400063997 | AT4G10040.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g011030.2.1 | Tomato | cytosol | 96.98 | 96.98 |
| VIT_08s0007g00740.t01 | Wine grape | nucleus | 68.51 | 84.47 |
| AT3G09350.1 | Thale cress | cytosol | 70.78 | 77.41 |
| Bra029761.1-P | Field mustard | cytosol | 71.54 | 77.38 |
| CDY41617 | Canola | cytosol | 71.54 | 77.38 |
| CDY44699 | Canola | cytosol | 71.28 | 77.11 |
| KRH65920 | Soybean | cytosol | 73.8 | 76.3 |
| KRH75713 | Soybean | cytosol | 72.8 | 74.87 |
| CDX73975 | Canola | cytosol | 67.51 | 74.86 |
| CDY07920 | Canola | cytosol | 67.25 | 74.58 |
| Bra001314.1-P | Field mustard | cytosol | 66.0 | 73.18 |
| GSMUA_Achr10P... | Banana | cytosol | 70.28 | 71.54 |
| Bra007027.1-P | Field mustard | cytosol | 62.47 | 68.32 |
| CDY65836 | Canola | cytosol | 62.47 | 68.32 |
| AT5G02150.1 | Thale cress | cytosol | 55.67 | 68.21 |
| AT3G53800.1 | Thale cress | cytosol | 62.22 | 68.04 |
| CDX73524 | Canola | cytosol | 61.46 | 67.22 |
| EER92486 | Sorghum | cytosol, extracellular, mitochondrion, plastid | 57.68 | 59.64 |
| Os03t0271400-01 | Rice | cytosol, extracellular, mitochondrion, plastid | 57.68 | 59.64 |
| Zm00001d028588_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 57.43 | 59.22 |
| HORVU4Hr1G060150.6 | Barley | mitochondrion | 56.68 | 58.9 |
| GSMUA_Achr7P15030_001 | Banana | extracellular | 21.66 | 56.58 |
| TraesCS4B01G208900.3 | Wheat | mitochondrion | 56.68 | 54.88 |
| TraesCS4D01G209700.2 | Wheat | cytosol, golgi, plastid | 56.42 | 54.37 |
| TraesCS4A01G095500.1 | Wheat | mitochondrion | 52.9 | 52.63 |
| CDX85186 | Canola | mitochondrion | 14.11 | 35.9 |
| PGSC0003DMT400034360 | Potato | endoplasmic reticulum, extracellular, vacuole | 20.4 | 21.6 |
| PGSC0003DMT400082480 | Potato | endoplasmic reticulum, extracellular, golgi | 20.4 | 21.54 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:102598108 | MapMan:19.1.5.4 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:Armadillo |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000225 | InterPro:IPR011989 |
| UniProt:M1AH59 | InterPro:Nucleotide_exch_fac_Fes1 | PFAM:PF08609 | EnsemblPlantsGene:PGSC0003DMG400008824 | PGSC:PGSC0003DMG400008824 | EnsemblPlants:PGSC0003DMT400022748 |
| PANTHER:PTHR19316 | PANTHER:PTHR19316:SF27 | SMART:SM00185 | SMART:SM01349 | SUPFAM:SSF48371 | InterPro:TOG |
| UniParc:UPI000295AF6D | RefSeq:XP_006341010.1 | : | : | : | : |
Description
Armadillo/beta-catenin repeat family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008824]
Coordinates
chr9:+:1552293..1557294
Molecular Weight (calculated)
43605.4 Da
IEP (calculated)
4.667
GRAVY (calculated)
-0.509
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEGPNWDG LLKWSLSHAD GTNPPSRNLS EEDRRWFMEA MQAQTVDVIK RMKEITLVMQ TPEQVLESQG VTSQDIEDML DELQEHVESI DMANDLNSIG
101: GLVPLLGYLK NSHANIRAKA AEVVSTIVQN NPRSQQLVME ANGLEPLLSN FTSDPDVTAR TKALGAISSL IRHNKPAIAA FRLANGYAAL RDALSSENVR
201: FQRKALNVIH YLLQENHSDC NVVTELGFPR VMMHLASSDD GEVREGALRG LLELAQDKTG EVAGSSSIEE NEKLKQILQE RIKGISSMSP EDLGAAKEER
301: QLVDSLWNTC YNEPSSLREK GLVVLPGEDA LPPDVASKHF EPPLRAWAAN RNEDTKPSNE KKQAPLLLGL GPPTQDPPAQ NSFSGAMSGE ENRDTSA
101: GLVPLLGYLK NSHANIRAKA AEVVSTIVQN NPRSQQLVME ANGLEPLLSN FTSDPDVTAR TKALGAISSL IRHNKPAIAA FRLANGYAAL RDALSSENVR
201: FQRKALNVIH YLLQENHSDC NVVTELGFPR VMMHLASSDD GEVREGALRG LLELAQDKTG EVAGSSSIEE NEKLKQILQE RIKGISSMSP EDLGAAKEER
301: QLVDSLWNTC YNEPSSLREK GLVVLPGEDA LPPDVASKHF EPPLRAWAAN RNEDTKPSNE KKQAPLLLGL GPPTQDPPAQ NSFSGAMSGE ENRDTSA
001: MAKDGPNWDG LLKWSLSHAD GTRPTRQLSE EDRKWFMEAM QSQTVDVVKR MKEITLVMQT PEQVLVEHGV TPEDIQDLLD ELQEHVESID MANDLHSIGG
101: LVPLLSFLKN SHANIRAKAA DVVSTIVQNN PRSQELVMET NALESLLSNF TSDTDIHART QALGAISSLI RHNKPGVTAF KLANGYAGLR DALASDSVRF
201: QRKALNLLQY LLQEDDSDRS IATGLGFPRV MMHLASSDDA EIREAALRGL LELSREKNDG SSSIDKSDEK LRQLLEERIK GITLMSQEDL ETVKEERQLV
301: DLLWSICYNE PSSLREKGLV VLPGEDALPP DVASKLFEPP LRASAANRNA TEKKDEPMKL LGP
101: LVPLLSFLKN SHANIRAKAA DVVSTIVQNN PRSQELVMET NALESLLSNF TSDTDIHART QALGAISSLI RHNKPGVTAF KLANGYAGLR DALASDSVRF
201: QRKALNLLQY LLQEDDSDRS IATGLGFPRV MMHLASSDDA EIREAALRGL LELSREKNDG SSSIDKSDEK LRQLLEERIK GITLMSQEDL ETVKEERQLV
301: DLLWSICYNE PSSLREKGLV VLPGEDALPP DVASKLFEPP LRASAANRNA TEKKDEPMKL LGP
Arabidopsis Description
Fes1AFes1A [Source:UniProtKB/TrEMBL;Acc:Q84J81]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.