Factsheet for VIT_08s0007g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g05810.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02150.1	VIT_18s0001g05810.t01	AT4G10040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011030.2.1	Tomato	cytosol	84.78	68.77
PGSC0003DMT400022748	Potato	nucleus	84.47	68.51
KRH65920	Soybean	cytosol	80.43	67.45
KRH75713	Soybean	cytosol	80.75	67.36
AT5G02150.1	Thale cress	cytosol	67.39	66.98
AT3G09350.1	Thale cress	cytosol	74.84	66.39
Bra029761.1-P	Field mustard	cytosol	75.16	65.94
CDY41617	Canola	cytosol	75.16	65.94
CDY44699	Canola	cytosol	75.16	65.94
GSMUA_Achr10P...	Banana	cytosol	79.19	65.38
CDX73975	Canola	cytosol	70.81	63.69
CDY07920	Canola	cytosol	70.5	63.41
Bra001314.1-P	Field mustard	cytosol	70.19	63.13
AT3G53800.1	Thale cress	cytosol	69.57	61.71
CDY65836	Canola	cytosol	69.57	61.71
Bra007027.1-P	Field mustard	cytosol	69.57	61.71
CDX73524	Canola	cytosol	68.94	61.16
GSMUA_Achr7P15030_001	Banana	extracellular	27.64	58.55
Os03t0271400-01	Rice	cytosol, extracellular, mitochondrion, plastid	66.46	55.73
EER92486	Sorghum	cytosol, extracellular, mitochondrion, plastid	66.15	55.47
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	65.84	55.06
HORVU4Hr1G060150.6	Barley	mitochondrion	65.22	54.97
TraesCS4B01G208900.3	Wheat	mitochondrion	65.22	51.22
TraesCS4D01G209700.2	Wheat	cytosol, golgi, plastid	65.53	51.21
TraesCS4A01G095500.1	Wheat	mitochondrion	62.11	50.13
CDX85186	Canola	mitochondrion	16.15	33.33
VIT_01s0150g00600.t01	Wine grape	cytosol	23.6	20.32

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100261411	wikigene:100261411	MapMan:19.1.5.4	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:CCB55572	ProteinID:CCB55572.1	ncoils:Coil	UniProt:F6HL85	EMBL:FN595991
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000225	InterPro:IPR011989	EntrezGene:LOC100261411
wikigene:LOC100261411	InterPro:Nucleotide_exch_fac_Fes1	PFAM:PF08609	PANTHER:PTHR19316	PANTHER:PTHR19316:SF27	SMART:SM00185
SMART:SM01349	SUPFAM:SSF48371	InterPro:TOG	UniParc:UPI000210965F	ArrayExpress:VIT_08s0007g00740	EnsemblPlantsGene:VIT_08s0007g00740
EnsemblPlants:VIT_08s0007g00740.t01	RefSeq:XP_002269511	RefSeq:XP_002269511.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:14953719..14958154

Molecular Weight (calculated)

35663.3 Da

IEP (calculated)

4.738

GRAVY (calculated)

-0.393

Length

322 amino acids

Sequence
(BLAST)

001: MAKDGPDWDG LLKWSLAHSD GTRPPRNLSE EERKWFMEAM QTQSVDVVKR MKEITLVMQT PEQVLEAQGV TSADIEDMLD ELQEHVESID MANDLHSIGG
101: LVPLLGYLKN SHSGIRAKAA EVITTIVQNN PRSQQLVMEA NGFEPLLSNF TSDPDITVRT KALGAIASLI RHNKPGIAAF RLANGYAALR DALGSESVRF
201: QRKALNLIHY LLHENSSDCN VVSELGFPRI MMHLASSDDS EVREAALRGL LELAQDKTSG GSDGLGEEDE KLKQLLQERI KGISLMSPED LGAAREERHL
301: VDSLWNACYN EPSSLRGEGS WY

Best Arabidopsis Sequence Match ( AT3G09350.1 )
(BLAST)

001: MAKDGPNWDG LLKWSLSHAD GTRPTRQLSE EDRKWFMEAM QSQTVDVVKR MKEITLVMQT PEQVLVEHGV TPEDIQDLLD ELQEHVESID MANDLHSIGG
101: LVPLLSFLKN SHANIRAKAA DVVSTIVQNN PRSQELVMET NALESLLSNF TSDTDIHART QALGAISSLI RHNKPGVTAF KLANGYAGLR DALASDSVRF
201: QRKALNLLQY LLQEDDSDRS IATGLGFPRV MMHLASSDDA EIREAALRGL LELSREKNDG SSSIDKSDEK LRQLLEERIK GITLMSQEDL ETVKEERQLV
301: DLLWSICYNE PSSLREKGLV VLPGEDALPP DVASKLFEPP LRASAANRNA TEKKDEPMKL LGP

Arabidopsis Description

Fes1AFes1A [Source:UniProtKB/TrEMBL;Acc:Q84J81]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.