Factsheet for VIT_01s0150g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89892	Soybean	cytosol, extracellular, plastid	40.11	63.83
CDX73670	Canola	extracellular	62.03	61.05
Bra006889.1-P	Field mustard	extracellular	60.96	60.0
GSMUA_Achr11P...	Banana	extracellular	63.64	59.95
CDX78051	Canola	extracellular	60.7	59.74
AT3G51980.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	60.96	59.69
KRG89891	Soybean	endoplasmic reticulum, extracellular	22.73	57.05
PGSC0003DMT400082480	Potato	endoplasmic reticulum, extracellular, golgi	56.95	56.65
PGSC0003DMT400034360	Potato	endoplasmic reticulum, extracellular, vacuole	56.68	56.53
Solyc04g009320.2.1	Tomato	golgi	55.88	55.59
Os09t0512700-01	Rice	extracellular, golgi	54.28	49.51
TraesCS5D01G303400.1	Wheat	golgi	53.48	48.54
TraesCS5A01G296200.1	Wheat	mitochondrion	53.21	48.3
EER97031	Sorghum	extracellular, golgi	52.41	48.16
TraesCS5B01G295400.1	Wheat	golgi	53.48	48.08
OQU89185	Sorghum	cytosol	29.14	46.98
HORVU5Hr1G065400.2	Barley	cytosol	21.93	46.33
Zm00001d021120_P001	Maize	extracellular, golgi, vacuole	51.87	45.75
EER96516	Sorghum	extracellular, golgi	50.0	45.28
HORVU5Hr1G078080.1	Barley	plastid	52.94	42.04
HORVU4Hr1G067060.5	Barley	cytosol	15.24	41.61
Zm00001d005544_P001	Maize	extracellular, golgi	31.82	33.06
VIT_08s0007g00740.t01	Wine grape	nucleus	20.32	23.6

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100266149	wikigene:100266149	MapMan:19.1.1.2.6	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB52294	ProteinID:CCB52294.1	UniProt:F6HJ96	EMBL:FN595770	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	InterPro:IPR011989
EntrezGene:LOC100266149	wikigene:LOC100266149	InterPro:Nucleotide_exch_fac_Fes1	PFAM:PF08609	PANTHER:PTHR19316	PANTHER:PTHR19316:SF18
SUPFAM:SSF48371	UniParc:UPI0002108241	ArrayExpress:VIT_01s0150g00600	EnsemblPlantsGene:VIT_01s0150g00600	EnsemblPlants:VIT_01s0150g00600.t01	unigene:Vvi.23813
RefSeq:XP_002269010	RefSeq:XP_002269010.2	:	:	:	:

Description

No Description!

Coordinates

chr1:+:22941191..22960097

Molecular Weight (calculated)

42053.7 Da

IEP (calculated)

5.011

GRAVY (calculated)

-0.324

Length

374 amino acids

Sequence
(BLAST)

001: MAQADRVNKS SSGGLFWSTA KEEGDLMRKS EAQESTVGVN DNADLDGGFS SLDGMLQWAI GHSDPTKLKE TAQDVQRFSP NELKKRQMEI KELMEKLKMP
101: SDAQLMQIAI ADLNNSSLPM EDHHRALQEL LILVEPIDNA NDLNKLGGLT VVIRELDNPD PEIRKTSAWI LGKASQNNPV VQKQVLELGA LPKLMKMVNS
201: SFVEEATKAL YAVSALIRNN LAAQELFYAK AGDLMLQDIL SNPSIDIRLR RKTVFLVGDL AECQLESTHK AELPFFSNRH FLKSVVDLTA SSDLDLQEKA
301: LIAVKNLLQL RTTEALVFKD YCDLDGALER MRKQLQQLMD EEYQRDYVMD LESLCREVEL IFHKKLGKVT HVPT

Best Arabidopsis Sequence Match ( AT3G51980.1 )
(BLAST)

001: MPTIFFFRYV FLLVVISLVG FSIAEKVNSS GGMVWSSVRD EAELVEDSGV VIGEQDQIDG GFSSLDGMLH WAIGHSDPAT LKEAAKDAEK MSLDELQKRQ
101: LELKELVEKL KMPSNAKLMQ IAIDDLNNSS LSLEDRHRAL QELLILVEPI DNANDLSKSG GLRVVAGELN HDDTEVRKLA AWVLGKASQN NPFVQEQVLE
201: LGALTTLIKM VNSSSTEEAV KALFAVSALI RNNIAGQDLF FAAHGYIMLR DVMNNGSLDM KLRRKAVFLV GDLAESQLQN TEKDELPIFK DRLFLKSVVD
301: LIVVLDLDLQ EKALTAIQTL LQLKSIEPQV LKESCGLEEA LERMKLQLEE SMADEYKRDY AADVESIRGE VELIFRQKLG LL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SV06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.