CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 3
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89185	Sorghum	cytosol	55.21	98.28
EER97031	Sorghum	extracellular, golgi	56.42	57.25
GSMUA_Achr11P...	Banana	extracellular	52.78	54.91
KRG89891	Soybean	endoplasmic reticulum, extracellular	18.16	50.34
VIT_01s0150g00600.t01	Wine grape	cytosol	45.28	50.0
Zm00001d005544_P001	Maize	extracellular, golgi	42.13	48.33
KRG89892	Soybean	cytosol, extracellular, plastid	27.36	48.09
CDX73670	Canola	extracellular	43.1	46.84
CDX78051	Canola	extracellular	42.37	46.05
AT3G51980.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	42.37	45.81
Bra006889.1-P	Field mustard	extracellular	42.13	45.79
Solyc04g009320.2.1	Tomato	golgi	40.19	44.15
PGSC0003DMT400082480	Potato	endoplasmic reticulum, extracellular, golgi	39.95	43.88
PGSC0003DMT400034360	Potato	endoplasmic reticulum, extracellular, vacuole	39.23	43.2
KXG37246	Sorghum	cytosol, nucleus, plasma membrane	20.82	23.12
EER92486	Sorghum	cytosol, extracellular, mitochondrion, plastid	21.31	22.92

Protein Annotations

EnsemblPlants:EER96516	EnsemblPlantsGene:SORBI_3002G160100	EntrezGene:8064661	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Nucleotide_exch_fac_Fes1	ncoils:Coil	PANTHER:PTHR19316
PANTHER:PTHR19316:SF18	PFAM:PF08609	ProteinID:EER96516	ProteinID:EER96516.1	RefSeq:XP_002459995.1	SEG:seg
SUPFAM:SSF48371	TMHMM:TMhelix	UniParc:UPI0001A83869	UniProt:C5X8X4	MapMan:19.1.1.2.6	:

Description

hypothetical protein

Coordinates

chr2:+:49470021..49472798

Molecular Weight (calculated)

45356.3 Da

IEP (calculated)

4.707

GRAVY (calculated)

-0.128

Length

413 amino acids

Sequence
(BLAST)

001: MAGANHPRCC HLPTLLAIIS AAALLLFFPR FSTTAAAAVD KGTNRSSLLG EPREWATGKD EAEILAEAEA RAAAGGEGLL ARDDGREFHS LDGMLQWAIG
101: NSDPDKLREK AAELESLSAE ELLKRQMEIK ELMETLKVPS DAELMKIAIA DLNNSSVLLE DRRRALQELL LFVEPIDNAN DLDKLGGLLP LIQELSNADE
201: GMRTTSAWVL GKASQNNVLV QNQILGYGAL QGLVKMGYSS SAPEAAKALY AVSSLIRDNE HGQELFLSEN GYAMLQHVLS TTRTNVRLQK KVVSLLAYIA
301: DFQLNTGKSQ APSLSNYFFV KSVVEMISSV PDLDLQEKAL LAVRSLLQLT SADATDLQKF SGLNDSLNTL RLQLDELTSH EEQREYALEV EILRREVHIV
401: FQQKIDQARV VAT

Best Arabidopsis Sequence Match ( AT3G51980.1 )
(BLAST)

001: MPTIFFFRYV FLLVVISLVG FSIAEKVNSS GGMVWSSVRD EAELVEDSGV VIGEQDQIDG GFSSLDGMLH WAIGHSDPAT LKEAAKDAEK MSLDELQKRQ
101: LELKELVEKL KMPSNAKLMQ IAIDDLNNSS LSLEDRHRAL QELLILVEPI DNANDLSKSG GLRVVAGELN HDDTEVRKLA AWVLGKASQN NPFVQEQVLE
201: LGALTTLIKM VNSSSTEEAV KALFAVSALI RNNIAGQDLF FAAHGYIMLR DVMNNGSLDM KLRRKAVFLV GDLAESQLQN TEKDELPIFK DRLFLKSVVD
301: LIVVLDLDLQ EKALTAIQTL LQLKSIEPQV LKESCGLEEA LERMKLQLEE SMADEYKRDY AADVESIRGE VELIFRQKLG LL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SV06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.