CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plastid

Predictor Summary:

nucleus 2
extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89185	Sorghum	cytosol	47.23	47.84
HORVU5Hr1G065400.2	Barley	cytosol	31.91	42.37
HORVU4Hr1G067060.5	Barley	cytosol	23.83	40.88
VIT_01s0150g00600.t01	Wine grape	cytosol	63.83	40.11
CDX73670	Canola	extracellular	57.45	35.53
Bra006889.1-P	Field mustard	extracellular	56.6	35.0
CDX78051	Canola	extracellular	56.6	35.0
AT3G51980.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	56.6	34.82
PGSC0003DMT400082480	Potato	endoplasmic reticulum, extracellular, golgi	54.04	33.78
Solyc04g009320.2.1	Tomato	golgi	52.77	32.98
PGSC0003DMT400034360	Potato	endoplasmic reticulum, extracellular, vacuole	52.34	32.8
GSMUA_Achr11P...	Banana	extracellular	54.47	32.24
Os09t0512700-01	Rice	extracellular, golgi	49.79	28.54
EER97031	Sorghum	extracellular, golgi	48.09	27.76
EER96516	Sorghum	extracellular, golgi	48.09	27.36
TraesCS5D01G303400.1	Wheat	golgi	46.38	26.46
TraesCS5A01G296200.1	Wheat	mitochondrion	46.38	26.46
TraesCS5B01G295400.1	Wheat	golgi	46.81	26.44
Zm00001d021120_P001	Maize	extracellular, golgi, vacuole	45.96	25.47
HORVU5Hr1G078080.1	Barley	plastid	47.66	23.78
Zm00001d005544_P001	Maize	extracellular, golgi	28.51	18.61
KRH65920	Soybean	cytosol	27.23	16.67
KRH75713	Soybean	cytosol	26.38	16.06
KRG89891	Soybean	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EMBL:ACUP02012305	EnsemblPlants:KRG89892	EnsemblPlantsGene:GLYMA_20G054400	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR19316	PANTHER:PTHR19316:SF18	ProteinID:KRG89892
ProteinID:KRG89892.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI000294C96F	UniProt:I1NE42	MapMan:19.1.1.2.6

Description

hypothetical protein

Coordinates

chr20:+:12567169..12569285

Molecular Weight (calculated)

26737.4 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.108

Length

235 amino acids

Sequence
(BLAST)

001: MVKFFIYDLS KLGGLLAVRE ELYCSDPGIR TIAAWVLGKA SQNNAIVQQQ ILELGVLSRL MKMVNSNSME EANKALYAVS ALIRNDLASQ GLFYAEAGGW
101: MLQDILSNTS LDVRLRRKAV RLLADLAAYQ LENVDREEQP FFNDQDLLKA VVDLTTSTDL DLQEKALVAI KSLLQLRTTE ARVFKDFCAL GDALNRMRQL
201: LHDLMADEYQ RDYVMDVENL RVEVEHTFQR KLKQS

Best Arabidopsis Sequence Match ( AT3G51980.1 )
(BLAST)

001: MPTIFFFRYV FLLVVISLVG FSIAEKVNSS GGMVWSSVRD EAELVEDSGV VIGEQDQIDG GFSSLDGMLH WAIGHSDPAT LKEAAKDAEK MSLDELQKRQ
101: LELKELVEKL KMPSNAKLMQ IAIDDLNNSS LSLEDRHRAL QELLILVEPI DNANDLSKSG GLRVVAGELN HDDTEVRKLA AWVLGKASQN NPFVQEQVLE
201: LGALTTLIKM VNSSSTEEAV KALFAVSALI RNNIAGQDLF FAAHGYIMLR DVMNNGSLDM KLRRKAVFLV GDLAESQLQN TEKDELPIFK DRLFLKSVVD
301: LIVVLDLDLQ EKALTAIQTL LQLKSIEPQV LKESCGLEEA LERMKLQLEE SMADEYKRDY AADVESIRGE VELIFRQKLG LL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SV06]
SUBAcon: [extracellular,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.