Factsheet for TraesCS5B01G295400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 2
golgi 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G303400.1	Wheat	golgi	96.15	97.09
TraesCS5A01G296200.1	Wheat	mitochondrion	94.23	95.15
HORVU5Hr1G065400.2	Barley	cytosol	36.3	85.31
HORVU4Hr1G067060.5	Barley	cytosol	27.4	83.21
Os09t0512700-01	Rice	extracellular, golgi	76.92	78.05
HORVU5Hr1G078080.1	Barley	plastid	86.54	76.43
EER97031	Sorghum	extracellular, golgi	71.39	72.97
Zm00001d021120_P001	Maize	extracellular, golgi, vacuole	66.83	65.57
GSMUA_Achr11P...	Banana	extracellular	54.81	57.43
VIT_01s0150g00600.t01	Wine grape	cytosol	48.08	53.48
KRG89891	Soybean	endoplasmic reticulum, extracellular	18.75	52.35
CDX73670	Canola	extracellular	45.91	50.26
CDX78051	Canola	extracellular	45.19	49.47
AT3G51980.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	44.95	48.95
Bra006889.1-P	Field mustard	extracellular	44.71	48.95
PGSC0003DMT400034360	Potato	endoplasmic reticulum, extracellular, vacuole	42.79	47.47
Solyc04g009320.2.1	Tomato	golgi	42.31	46.81
PGSC0003DMT400082480	Potato	endoplasmic reticulum, extracellular, golgi	42.31	46.81
KRG89892	Soybean	cytosol, extracellular, plastid	26.44	46.81
TraesCS5B01G495500.1	Wheat	cytosol	21.15	23.1
TraesCS4B01G208900.3	Wheat	mitochondrion	21.88	22.2

Protein Annotations

EnsemblPlants:TraesCS5B01G295400.1	EnsemblPlantsGene:TraesCS5B01G295400	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Nucleotide_exch_fac_Fes1	PANTHER:PTHR19316	PANTHER:PTHR19316:SF18	PFAM:PF08609
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF48371	TMHMM:TMhelix	MapMan:19.1.1.2.6	:

Description

No Description!

Coordinates

chr5B:+:479319688..479323187

Molecular Weight (calculated)

45020.0 Da

IEP (calculated)

4.577

GRAVY (calculated)

-0.104

Length

416 amino acids

Sequence
(BLAST)

001: MAKARPRSER SSHRRRILLL VVSLLSAVLL LPAATASAAV AVAAEGDGEN RSRGAATQWA TGKDEGELAA EREAAGGGSV VEDDFAGGFG SLDSMLQWAI
101: GNSDPGRLKE EAADVQKLSE DELLKRRHEI KDLMEKLKMP SDADLMKIAI ADLNNASISL EDRQRALQEL LILVEPIDNA NDLDKIGGLV PVIQDLNNAN
201: EEIRITSAWI LGTASQNNAL VQSQILGYGA LARLVKMGYS TSAKEAAKAM YAISALIRNN VNGQEAFTSE NGNAMLQHIL GSNSVDVRLQ KKAVFLITDL
301: ADFQLNSGSS GLPFLSERVF LKLVTDMLST FDLDLQEKVL LAIRSLLKLP STDAMDLESC GLDSVLYRLG VQLEELPSEE QKEYAGEVDA LRREVEMLFQ
401: QKLKPGTATA ALQMLG

Best Arabidopsis Sequence Match ( AT3G51980.1 )
(BLAST)

001: MPTIFFFRYV FLLVVISLVG FSIAEKVNSS GGMVWSSVRD EAELVEDSGV VIGEQDQIDG GFSSLDGMLH WAIGHSDPAT LKEAAKDAEK MSLDELQKRQ
101: LELKELVEKL KMPSNAKLMQ IAIDDLNNSS LSLEDRHRAL QELLILVEPI DNANDLSKSG GLRVVAGELN HDDTEVRKLA AWVLGKASQN NPFVQEQVLE
201: LGALTTLIKM VNSSSTEEAV KALFAVSALI RNNIAGQDLF FAAHGYIMLR DVMNNGSLDM KLRRKAVFLV GDLAESQLQN TEKDELPIFK DRLFLKSVVD
301: LIVVLDLDLQ EKALTAIQTL LQLKSIEPQV LKESCGLEEA LERMKLQLEE SMADEYKRDY AADVESIRGE VELIFRQKLG LL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SV06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.