Factsheet for PGSC0003DMT400082480

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009320.2.1	Tomato	golgi	95.48	95.48
PGSC0003DMT400034360	Potato	endoplasmic reticulum, extracellular, vacuole	92.29	92.53
VIT_01s0150g00600.t01	Wine grape	cytosol	56.65	56.95
KRG89892	Soybean	cytosol, extracellular, plastid	33.78	54.04
CDX73670	Canola	extracellular	53.19	52.63
CDX78051	Canola	extracellular	52.13	51.58
Bra006889.1-P	Field mustard	extracellular	51.6	51.05
AT3G51980.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	51.6	50.79
GSMUA_Achr11P...	Banana	extracellular	50.8	48.11
KRG89891	Soybean	endoplasmic reticulum, extracellular	18.88	47.65
EER97031	Sorghum	extracellular, golgi	49.73	45.95
HORVU5Hr1G065400.2	Barley	cytosol	21.01	44.63
Os09t0512700-01	Rice	extracellular, golgi	47.34	43.41
TraesCS5A01G296200.1	Wheat	mitochondrion	47.34	43.2
Zm00001d021120_P001	Maize	extracellular, golgi, vacuole	48.67	43.16
TraesCS5D01G303400.1	Wheat	golgi	46.54	42.48
TraesCS5B01G295400.1	Wheat	golgi	46.81	42.31
OQU89185	Sorghum	cytosol	25.0	40.52
HORVU4Hr1G067060.5	Barley	cytosol	14.63	40.15
EER96516	Sorghum	extracellular, golgi	43.88	39.95
HORVU5Hr1G078080.1	Barley	plastid	47.07	37.58
Zm00001d005544_P001	Maize	extracellular, golgi	26.33	27.5
PGSC0003DMT400022748	Potato	nucleus	21.54	20.4

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102596597	MapMan:19.1.1.2.6	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000225	InterPro:IPR011989
UniProt:M1D615	InterPro:Nucleotide_exch_fac_Fes1	PFAM:PF08609	EnsemblPlantsGene:PGSC0003DMG400032561	PGSC:PGSC0003DMG400032561	EnsemblPlants:PGSC0003DMT400082480
PANTHER:PTHR19316	PANTHER:PTHR19316:SF18	SMART:SM00185	SUPFAM:SSF48371	SignalP:SignalP-noTM	UniParc:UPI0002948992
RefSeq:XP_006359307.1	SEG:seg	:	:	:	:

Description

Sil1 [Source:PGSC_GENE;Acc:PGSC0003DMG400032561]

Coordinates

chr4:+:4904956..4912061

Molecular Weight (calculated)

42007.0 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.059

Length

376 amino acids

Sequence
(BLAST)

001: MAKFILIAVF MVVLITNFAS SEVAASSGVV VGSSNPKEEG NKLAMVQEEE DMDGGFSSLD GMLQWAIGHS DPGVLKERSE VAQRMSPEEL NKRQTELKEL
101: MEKLKMPSDA QLMLIAVNDL NNSSLPLEHH LRALEELLVL VEHIDNAIDL QKLGGFSVLV RILNHSVPEI RTAAAWVLGK ASQNNPIVQK QVLELGALTM
201: LMKMMKSHTT EEAVKALFAI SALIRNNVNG QSLFYQEAGD TMLQEVLSNS NLDIRLHKKS LFLIADLAES QLENENTAEV SFFSNRLLLK AIVDSMASSD
301: LDLTEKALYA IKNILLLRST EVQLFKDFCK LNEVLERTRQ QLNDHREEYA MDVESLRKEV NLTFLQKLNK VTQAAL

Best Arabidopsis Sequence Match ( AT3G51980.1 )
(BLAST)

001: MPTIFFFRYV FLLVVISLVG FSIAEKVNSS GGMVWSSVRD EAELVEDSGV VIGEQDQIDG GFSSLDGMLH WAIGHSDPAT LKEAAKDAEK MSLDELQKRQ
101: LELKELVEKL KMPSNAKLMQ IAIDDLNNSS LSLEDRHRAL QELLILVEPI DNANDLSKSG GLRVVAGELN HDDTEVRKLA AWVLGKASQN NPFVQEQVLE
201: LGALTTLIKM VNSSSTEEAV KALFAVSALI RNNIAGQDLF FAAHGYIMLR DVMNNGSLDM KLRRKAVFLV GDLAESQLQN TEKDELPIFK DRLFLKSVVD
301: LIVVLDLDLQ EKALTAIQTL LQLKSIEPQV LKESCGLEEA LERMKLQLEE SMADEYKRDY AADVESIRGE VELIFRQKLG LL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SV06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.