Factsheet for Zm00001d005544_P001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89185	Sorghum	cytosol	30.56	47.41
EER96516	Sorghum	extracellular, golgi	48.33	42.13
KRG89891	Soybean	endoplasmic reticulum, extracellular	15.28	36.91
Zm00001d021120_P001	Maize	extracellular, golgi, vacuole	38.61	32.78
GSMUA_Achr11P...	Banana	extracellular	36.11	32.75
VIT_01s0150g00600.t01	Wine grape	cytosol	33.06	31.82
AT3G51980.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	31.94	30.1
KRG89892	Soybean	cytosol, extracellular, plastid	18.61	28.51
Bra006889.1-P	Field mustard	extracellular	30.0	28.42
CDX73670	Canola	extracellular	30.0	28.42
CDX78051	Canola	extracellular	29.72	28.16
PGSC0003DMT400082480	Potato	endoplasmic reticulum, extracellular, golgi	27.5	26.33
Solyc04g009320.2.1	Tomato	golgi	26.94	25.8
PGSC0003DMT400034360	Potato	endoplasmic reticulum, extracellular, vacuole	26.67	25.6
Zm00001d012955_P001	Maize	cytosol	13.89	17.54
Zm00001d034667_P002	Maize	cytosol	16.67	16.13
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	16.67	15.58

Protein Annotations

EnsemblPlants:Zm00001d005544_P001	EnsemblPlants:Zm00001d005544_T001	EnsemblPlantsGene:Zm00001d005544	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Nucleotide_exch_fac_Fes1	PANTHER:PTHR19316	PANTHER:PTHR19316:SF18
PFAM:PF08609	ProteinID:ONM21433.1	SEG:seg	SignalP:SignalP-TM	SUPFAM:SSF48371	TMHMM:TMhelix
UniParc:UPI000845009E	UniProt:A0A1D6ENR8	MapMan:19.1.1.2.6	:	:	:

Description

ARM repeat superfamily protein

Coordinates

chr2:+:178130749..178133713

Molecular Weight (calculated)

40056.5 Da

IEP (calculated)

7.699

GRAVY (calculated)

-0.459

Length

360 amino acids

Sequence
(BLAST)

001: MTGAKQSRRC NLLTFFSTIL ATVLLLIFQR FSPTAAAVPQ WRRGGTQEHI DVARGAEAVG HGQGRCEDSL RGGSSRWRRR RGFADGGRGT RVRLALQHAA
101: VGNWYRLGTL RWGQIDSKTA DAGNSDPDKL REKAAELVKL SAEELLKRQM EIKELMEKFK APSDAELIKI AIADLNNSSL EDRQRALQEL LILVEPIDNA
201: NDEGIRTTSA WVLGKASQDN VLVQNQINGY GALDRLVKMG YSSSGPEAAK ALYTISSLIR DNEHGQELFL SENGYAMLQA LLAVRNLLHL TSADATDLQK
301: FSGLDDSLNA LKVQLDELTS HEEQREYAPE IEILRREVHT VFQRKTDQAR VVTNEGKYNG

Best Arabidopsis Sequence Match ( AT3G51980.1 )
(BLAST)

001: MPTIFFFRYV FLLVVISLVG FSIAEKVNSS GGMVWSSVRD EAELVEDSGV VIGEQDQIDG GFSSLDGMLH WAIGHSDPAT LKEAAKDAEK MSLDELQKRQ
101: LELKELVEKL KMPSNAKLMQ IAIDDLNNSS LSLEDRHRAL QELLILVEPI DNANDLSKSG GLRVVAGELN HDDTEVRKLA AWVLGKASQN NPFVQEQVLE
201: LGALTTLIKM VNSSSTEEAV KALFAVSALI RNNIAGQDLF FAAHGYIMLR DVMNNGSLDM KLRRKAVFLV GDLAESQLQN TEKDELPIFK DRLFLKSVVD
301: LIVVLDLDLQ EKALTAIQTL LQLKSIEPQV LKESCGLEEA LERMKLQLEE SMADEYKRDY AADVESIRGE VELIFRQKLG LL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SV06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.