Factsheet for Solyc04g009320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082480	Potato	endoplasmic reticulum, extracellular, golgi	95.48	95.48
PGSC0003DMT400034360	Potato	endoplasmic reticulum, extracellular, vacuole	90.96	91.2
VIT_01s0150g00600.t01	Wine grape	cytosol	55.59	55.88
KRG89892	Soybean	cytosol, extracellular, plastid	32.98	52.77
CDX73670	Canola	extracellular	51.86	51.32
CDX78051	Canola	extracellular	50.8	50.26
AT3G51980.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	50.53	49.74
Bra006889.1-P	Field mustard	extracellular	50.27	49.74
GSMUA_Achr11P...	Banana	extracellular	50.53	47.86
KRG89891	Soybean	endoplasmic reticulum, extracellular	18.62	46.98
EER97031	Sorghum	extracellular, golgi	49.2	45.45
HORVU5Hr1G065400.2	Barley	cytosol	20.74	44.07
TraesCS5A01G296200.1	Wheat	mitochondrion	47.34	43.2
Os09t0512700-01	Rice	extracellular, golgi	47.07	43.17
Zm00001d021120_P001	Maize	extracellular, golgi, vacuole	48.4	42.92
TraesCS5D01G303400.1	Wheat	golgi	46.54	42.48
TraesCS5B01G295400.1	Wheat	golgi	46.81	42.31
OQU89185	Sorghum	cytosol	25.27	40.95
HORVU4Hr1G067060.5	Barley	cytosol	14.89	40.88
EER96516	Sorghum	extracellular, golgi	44.15	40.19
HORVU5Hr1G078080.1	Barley	plastid	46.28	36.94
Zm00001d005544_P001	Maize	extracellular, golgi	25.8	26.94
Solyc09g011030.2.1	Tomato	cytosol	21.54	20.4

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.1.1.2.6	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	InterPro:IPR000225	InterPro:IPR011989	UniProt:K4BP88	InterPro:Nucleotide_exch_fac_Fes1
PFAM:PF08609	PANTHER:PTHR19316	PANTHER:PTHR19316:SF18	SMART:SM00185	SUPFAM:SSF48371	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc04g009320.2	EnsemblPlants:Solyc04g009320.2.1	UniParc:UPI00027657E3	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:2766840..2771952

Molecular Weight (calculated)

42016.9 Da

IEP (calculated)

4.682

GRAVY (calculated)

-0.037

Length

376 amino acids

Sequence
(BLAST)

001: MAKFIFIAVF MVVLIANFAS SEVAASSVVV VGSSNPKEEG NKLAMVQEEE DMDGGFSSLD GMLQWAIGHS DPGVLKERSE VAQRMSPEEL NKRQTELKEL
101: MEKLKIPSDA QLMLIAVNDL NNSSLPLEHH LRALEELLVL VEHIDNAIDL QKLGGFSILV RILNHSEPEI RIAAAWVLGK ASQNNPIVQK QVLELGALTV
201: LMKMMKSHTT EEAVKALFAI SALIRNNMNG RSLFYQEAGD TMLQEVLSNS NLDIRLHKKS LFLIADLAES QLENENTAEV SFFSNRLLLK AIVDSMASSD
301: LDLTEKALYA TKNLLLLRST DVQLFKDFCK LNEVLERTRQ QLNDLSEEYA MDVESLRKEV NLTFLQKLNE VTQSAL

Best Arabidopsis Sequence Match ( AT3G51980.1 )
(BLAST)

001: MPTIFFFRYV FLLVVISLVG FSIAEKVNSS GGMVWSSVRD EAELVEDSGV VIGEQDQIDG GFSSLDGMLH WAIGHSDPAT LKEAAKDAEK MSLDELQKRQ
101: LELKELVEKL KMPSNAKLMQ IAIDDLNNSS LSLEDRHRAL QELLILVEPI DNANDLSKSG GLRVVAGELN HDDTEVRKLA AWVLGKASQN NPFVQEQVLE
201: LGALTTLIKM VNSSSTEEAV KALFAVSALI RNNIAGQDLF FAAHGYIMLR DVMNNGSLDM KLRRKAVFLV GDLAESQLQN TEKDELPIFK DRLFLKSVVD
301: LIVVLDLDLQ EKALTAIQTL LQLKSIEPQV LKESCGLEEA LERMKLQLEE SMADEYKRDY AADVESIRGE VELIFRQKLG LL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SV06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.