Factsheet for TraesCS5D01G303400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G296200.1	Wheat	mitochondrion	96.36	96.36
TraesCS5B01G295400.1	Wheat	golgi	97.09	96.15
HORVU5Hr1G065400.2	Barley	cytosol	36.65	85.31
HORVU4Hr1G067060.5	Barley	cytosol	27.91	83.94
Os09t0512700-01	Rice	extracellular, golgi	77.67	78.05
HORVU5Hr1G078080.1	Barley	plastid	87.38	76.43
EER97031	Sorghum	extracellular, golgi	71.84	72.73
Zm00001d021120_P001	Maize	extracellular, golgi, vacuole	66.99	65.09
GSMUA_Achr11P...	Banana	extracellular	55.1	57.18
VIT_01s0150g00600.t01	Wine grape	cytosol	48.54	53.48
KRG89891	Soybean	endoplasmic reticulum, extracellular	18.93	52.35
CDX73670	Canola	extracellular	46.36	50.26
CDX78051	Canola	extracellular	45.63	49.47
AT3G51980.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	45.39	48.95
Bra006889.1-P	Field mustard	extracellular	45.15	48.95
PGSC0003DMT400034360	Potato	endoplasmic reticulum, extracellular, vacuole	42.96	47.2
Solyc04g009320.2.1	Tomato	golgi	42.48	46.54
PGSC0003DMT400082480	Potato	endoplasmic reticulum, extracellular, golgi	42.48	46.54
KRG89892	Soybean	cytosol, extracellular, plastid	26.46	46.38
TraesCS5D01G496000.1	Wheat	cytosol	21.6	23.36
TraesCS4D01G209700.2	Wheat	cytosol, golgi, plastid	22.09	22.09

Protein Annotations

EnsemblPlants:TraesCS5D01G303400.1	EnsemblPlantsGene:TraesCS5D01G303400	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR006311	InterPro:IPR011989	InterPro:Nucleotide_exch_fac_Fes1	InterPro:TAT_signal	PANTHER:PTHR19316
PANTHER:PTHR19316:SF18	PFAM:PF08609	PFscan:PS51318	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF48371
TMHMM:TMhelix	MapMan:19.1.1.2.6	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:399145475..399149129

Molecular Weight (calculated)

44574.2 Da

IEP (calculated)

4.667

GRAVY (calculated)

-0.138

Length

412 amino acids

Sequence
(BLAST)

001: MAKARPHSER SSHRRRNLLL AVALLSAALL LPAATASAAV AVAAEGDGEN RSRGAATQWA TGKDEGELAA EREAVGVGSV VEDDFAGGFG SLDSMLQWAI
101: GNSDPGRLKE EAADVQKLSE DELLKRRHEI KDLMEKLKMP SDADLMKIAI ADLNNASISL EDRQRALQEL LILVEPIDNA NDLDKIGGLV PVIQDLNNAN
201: EEIRITSAWI LGTASQNNAL VQSQILGYGA LARLVKMGYS TSAKEAAKAM YAISALIRNN VNGQEAFTSE NGNAMLQHIL GSNSVDVRLQ KKAVFLITDL
301: ADFQLNSGSS GLAFLSERVF LKSVTDMLSK FDLDLQEKVL LAIRSLLKLP STDATDLESC GLDSVLYRLG VQLEELPSEE QKEYAGEVDA LRREVEMLFQ
401: QKLKRGTATA AL

Best Arabidopsis Sequence Match ( AT3G51980.1 )
(BLAST)

001: MPTIFFFRYV FLLVVISLVG FSIAEKVNSS GGMVWSSVRD EAELVEDSGV VIGEQDQIDG GFSSLDGMLH WAIGHSDPAT LKEAAKDAEK MSLDELQKRQ
101: LELKELVEKL KMPSNAKLMQ IAIDDLNNSS LSLEDRHRAL QELLILVEPI DNANDLSKSG GLRVVAGELN HDDTEVRKLA AWVLGKASQN NPFVQEQVLE
201: LGALTTLIKM VNSSSTEEAV KALFAVSALI RNNIAGQDLF FAAHGYIMLR DVMNNGSLDM KLRRKAVFLV GDLAESQLQN TEKDELPIFK DRLFLKSVVD
301: LIVVLDLDLQ EKALTAIQTL LQLKSIEPQV LKESCGLEEA LERMKLQLEE SMADEYKRDY AADVESIRGE VELIFRQKLG LL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SV06]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.