Factsheet for AT3G51980.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

endoplasmic reticulum 6
golgi 5
extracellular 6
vacuole 4
plasma membrane 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006889.1-P	Field mustard	extracellular	83.77	84.21
CDX73670	Canola	extracellular	81.15	81.58
CDX78051	Canola	extracellular	80.63	81.05
VIT_01s0150g00600.t01	Wine grape	cytosol	59.69	60.96
KRG89892	Soybean	cytosol, extracellular, plastid	34.82	56.6
GSMUA_Achr11P...	Banana	extracellular	54.71	52.64
PGSC0003DMT400082480	Potato	endoplasmic reticulum, extracellular, golgi	50.79	51.6
KRG89891	Soybean	endoplasmic reticulum, extracellular	19.9	51.01
PGSC0003DMT400034360	Potato	endoplasmic reticulum, extracellular, vacuole	50.0	50.93
Solyc04g009320.2.1	Tomato	golgi	49.74	50.53
Os09t0512700-01	Rice	extracellular, golgi	49.74	46.34
EER97031	Sorghum	extracellular, golgi	49.21	46.19
TraesCS5D01G303400.1	Wheat	golgi	48.95	45.39
TraesCS5A01G296200.1	Wheat	mitochondrion	48.69	45.15
TraesCS5B01G295400.1	Wheat	golgi	48.95	44.95
OQU89185	Sorghum	cytosol	26.96	44.4
HORVU5Hr1G065400.2	Barley	cytosol	20.42	44.07
Zm00001d021120_P001	Maize	extracellular, golgi, vacuole	48.17	43.4
EER96516	Sorghum	extracellular, golgi	45.81	42.37
HORVU4Hr1G067060.5	Barley	cytosol	15.18	42.34
HORVU5Hr1G078080.1	Barley	plastid	48.17	39.07
Zm00001d005544_P001	Maize	extracellular, golgi	30.1	31.94
AT3G09350.1	Thale cress	cytosol	23.04	24.24
AT5G02150.1	Thale cress	cytosol	20.42	24.07
AT3G53800.1	Thale cress	cytosol	22.25	23.42

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.1.1.2.6	EntrezGene:824361	UniProt:A0A178VDL7	ProteinID:AEE78871.1	InterPro:ARM-like
InterPro:ARM-type_fold	ArrayExpress:AT3G51980	EnsemblPlantsGene:AT3G51980	RefSeq:AT3G51980	TAIR:AT3G51980	RefSeq:AT3G51980-TAIR-G
EnsemblPlants:AT3G51980.1	TAIR:AT3G51980.1	EMBL:AY091136	EMBL:AY122923	Unigene:At.35337	ProteinID:CAB41318.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011989	RefSeq:NP_190766.1
InterPro:Nucleotide_exch_fac_Fes1	ProteinID:OAP03884.1	PFAM:PF08609	PO:PO:0000293	PANTHER:PTHR19316	PANTHER:PTHR19316:SF18
UniProt:Q9SV06	SUPFAM:SSF48371	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00000A676F	SEG:seg

Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SV06]

Coordinates

chr3:-:19285572..19287552

Molecular Weight (calculated)

42532.5 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.027

Length

382 amino acids

Sequence
(BLAST)

001: MPTIFFFRYV FLLVVISLVG FSIAEKVNSS GGMVWSSVRD EAELVEDSGV VIGEQDQIDG GFSSLDGMLH WAIGHSDPAT LKEAAKDAEK MSLDELQKRQ
101: LELKELVEKL KMPSNAKLMQ IAIDDLNNSS LSLEDRHRAL QELLILVEPI DNANDLSKSG GLRVVAGELN HDDTEVRKLA AWVLGKASQN NPFVQEQVLE
201: LGALTTLIKM VNSSSTEEAV KALFAVSALI RNNIAGQDLF FAAHGYIMLR DVMNNGSLDM KLRRKAVFLV GDLAESQLQN TEKDELPIFK DRLFLKSVVD
301: LIVVLDLDLQ EKALTAIQTL LQLKSIEPQV LKESCGLEEA LERMKLQLEE SMADEYKRDY AADVESIRGE VELIFRQKLG LL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.