Factsheet for TraesCS4A01G095500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G263300.1
TraesCS1B01G273900.1
TraesCS1D01G263400.1
TraesCS3A01G405000.1
TraesCS3B01G438700.1
TraesCS3D01G400400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02150.1	TraesCS1A01G263300.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS1B01G273900.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS1D01G263400.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS3A01G405000.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS3B01G438700.1	AT4G10040.1	21798944
AT5G02150.1	TraesCS3D01G400400.1	AT4G10040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G060150.6	Barley	mitochondrion	84.96	88.74
TraesCS4B01G208900.3	Wheat	mitochondrion	86.47	84.15
TraesCS4D01G209700.2	Wheat	cytosol, golgi, plastid	85.71	83.01
Os03t0271400-01	Rice	cytosol, extracellular, mitochondrion, plastid	75.69	78.65
EER92486	Sorghum	cytosol, extracellular, mitochondrion, plastid	74.69	77.6
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	73.68	76.36
VIT_08s0007g00740.t01	Wine grape	nucleus	50.13	62.11
GSMUA_Achr10P...	Banana	cytosol	55.64	56.92
AT3G09350.1	Thale cress	cytosol	50.38	55.37
Bra029761.1-P	Field mustard	cytosol	50.88	55.31
CDY41617	Canola	cytosol	50.63	55.04
CDY44699	Canola	cytosol	50.38	54.77
AT3G53800.1	Thale cress	cytosol	49.62	54.55
CDX73975	Canola	cytosol	48.12	53.63
TraesCS5A01G482400.1	Wheat	cytosol	51.13	53.54
Solyc09g011030.2.1	Tomato	cytosol	53.13	53.4
KRH75713	Soybean	cytosol	51.63	53.37
AT5G02150.1	Thale cress	cytosol	43.11	53.09
Bra001314.1-P	Field mustard	cytosol	47.62	53.07
CDY07920	Canola	cytosol	47.62	53.07
PGSC0003DMT400022748	Potato	nucleus	52.63	52.9
KRH65920	Soybean	cytosol	50.63	52.6
Bra007027.1-P	Field mustard	cytosol	47.37	52.07
CDY65836	Canola	cytosol	47.37	52.07
CDX73524	Canola	cytosol	46.87	51.52
GSMUA_Achr7P15030_001	Banana	extracellular	19.3	50.66
TraesCS5A01G296200.1	Wheat	mitochondrion	22.31	21.6
CDX85186	Canola	mitochondrion	8.27	21.15

Protein Annotations

EnsemblPlants:TraesCS4A01G095500.1	EnsemblPlantsGene:TraesCS4A01G095500	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR19316	PANTHER:PTHR19316:SF21	SEG:seg	SUPFAM:SSF48371
MapMan:19.1.5.4	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:103724058..103726874

Molecular Weight (calculated)

43790.4 Da

IEP (calculated)

5.653

GRAVY (calculated)

-0.177

Length

399 amino acids

Sequence
(BLAST)

001: MEPLLHGRRA AFARHQVGRR ENGGFMSSAV FIWAAAEASV WCAVLCSEEE RKWLAEAVER HMAEDVVGRL REIALLMRTP LSVLEAQGIT PEDIEDLLAE
101: LQVHVESIDI ANDLHSVGGL VPVIRYLRNT NARIRAKAAD VVTTVVQNNP TSQQLVMEAS GFEPLVSNFT SDPDLTARIK ALGALSSLIR NNKPGVAAFR
201: LANGYAGLRD ALNTESARFQ RKALSLTHHL LSESHSDCSV FAQLGFPRLM MRLVSSDDSG VREAALGGLL ELAKDTTLGN RSLLAEQDRL RRLLWGRIQS
301: IRMMAPEDLD AAREERQLVD SLWIACYHEP STLHREGFVV LPGEESFEQP PDVAGRFFEP LRRAPLQRAP PSPDERSDPG NGTAGGIMLL LGPAAGNSE

Best Arabidopsis Sequence Match ( AT3G09350.1 )
(BLAST)

001: MAKDGPNWDG LLKWSLSHAD GTRPTRQLSE EDRKWFMEAM QSQTVDVVKR MKEITLVMQT PEQVLVEHGV TPEDIQDLLD ELQEHVESID MANDLHSIGG
101: LVPLLSFLKN SHANIRAKAA DVVSTIVQNN PRSQELVMET NALESLLSNF TSDTDIHART QALGAISSLI RHNKPGVTAF KLANGYAGLR DALASDSVRF
201: QRKALNLLQY LLQEDDSDRS IATGLGFPRV MMHLASSDDA EIREAALRGL LELSREKNDG SSSIDKSDEK LRQLLEERIK GITLMSQEDL ETVKEERQLV
301: DLLWSICYNE PSSLREKGLV VLPGEDALPP DVASKLFEPP LRASAANRNA TEKKDEPMKL LGP

Arabidopsis Description

Fes1AFes1A [Source:UniProtKB/TrEMBL;Acc:Q84J81]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.