CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65836	Canola	cytosol	98.07	98.07
Bra007027.1-P	Field mustard	cytosol	97.8	97.8
AT3G53800.1	Thale cress	cytosol	90.36	90.36
VIT_08s0007g00740.t01	Wine grape	nucleus	61.16	68.94
CDY44699	Canola	cytosol	66.67	65.94
CDY41617	Canola	cytosol	65.84	65.12
CDY07920	Canola	cytosol	62.26	63.13
CDX73975	Canola	cytosol	61.98	62.85
KRH65920	Soybean	cytosol	65.84	62.24
KRH75713	Soybean	cytosol	65.56	61.66
PGSC0003DMT400022748	Potato	nucleus	67.22	61.46
Solyc09g011030.2.1	Tomato	cytosol	66.67	60.96
GSMUA_Achr10P...	Banana	cytosol	64.19	59.74
EER92486	Sorghum	cytosol, extracellular, mitochondrion, plastid	59.5	56.25
Zm00001d028588_P001	Maize	cytosol, extracellular, mitochondrion, plastid	59.5	56.1
Os03t0271400-01	Rice	cytosol, extracellular, mitochondrion, plastid	58.13	54.95
HORVU4Hr1G060150.6	Barley	mitochondrion	55.92	53.14
GSMUA_Achr7P15030_001	Banana	extracellular	21.76	51.97
CDX85186	Canola	mitochondrion	21.76	50.64
TraesCS4D01G209700.2	Wheat	cytosol, golgi, plastid	56.47	49.76
TraesCS4B01G208900.3	Wheat	mitochondrion	56.2	49.76
TraesCS4A01G095500.1	Wheat	mitochondrion	51.52	46.87
CDX78051	Canola	extracellular	23.14	22.11
CDX73670	Canola	extracellular	23.14	22.11

Protein Annotations

EnsemblPlants:CDX73524	EnsemblPlantsGene:GSBRNA2T00109047001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Nucleotide_exch_fac_Fes1	InterPro:TOG	ncoils:Coil	PANTHER:PTHR19316
PANTHER:PTHR19316:SF27	PFAM:PF08609	ProteinID:CDX73524	ProteinID:CDX73524.1	SMART:SM01349	SUPFAM:SSF48371
UniParc:UPI0004EF0373	MapMan:19.1.5.4	:	:	:	:

Description

BnaC08g24790D

Coordinates

chrLK031799:-:967029..969035

Molecular Weight (calculated)

41201.1 Da

IEP (calculated)

4.697

GRAVY (calculated)

-0.396

Length

363 amino acids

Sequence
(BLAST)

001: MANNGPSWDG LLKWSLSHSD GASPSRPLSE EDRQWFMEAM QGHTIDSISR MKQISQIMKM PEHLLDSQGV TTDDLEGMLD ELQEHVESID LANDLHSIGG
101: LVPLLSYLKN SNAKIRAKAA DVLTTVVQNN PRSQQLVMEA NGFEPLLTNF ITDPDIRVRT KALGAISSLI RHNQQGITAF RLANGYAGLR DALVSDTVRF
201: QRKALNLIHY LLQESNSDCR IVRDLGFPRI MIHLASNQDL EVREFALRGL VELSREESER NLDRADVNLR QLLEERTRRI IAMSEEDLCA AREERELVDI
301: LWTVCYDEPS LLRERGLVYL PCDDEMAPDV VRDRFEPPLR AWAARRDDEM NEPPVPLLLG PAQ

Best Arabidopsis Sequence Match ( AT3G53800.1 )
(BLAST)

001: MANNGPNWDG LLKWSLSHSD GASSSSRISE EDRQWFVEAM QAHTIDSISR MKVISQIMKM PEQVLEAQGV TPDDLEGMLA ELQEHVESID LANDLHSIGG
101: LVPLLSYLKN SNAKIRAKSA DVLTTVVQNN PRSQQLVMEA NGFEPLLTNF IADPDIRVRT KALGAISSLI RNNQPGITAF RLANGYAGLR DALVSDTVRF
201: QRKALNLLHY LLQESNSDCK IVRDLGFPRI MIHLASNQDF EVREFALRGL LELAREESVR NLDRGDVNLR QLLEERTRRI IVMSDEDLCA AREERQLVDS
301: LWTVCYDEPS LLRERGLVYL PSDDELAPDV VRDRFEPPLR AWAARRHDET SESPVPLLLG PAP

Arabidopsis Description

Fes1BFes1B [Source:UniProtKB/TrEMBL;Acc:Q9M346]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.