CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89528
EER90950
EER91090
EER92642
EER95833
OQU90921
OQU91064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	EER90950	AT4G08150.1	21798944
AT1G22840.1	EER91090	AT4G08150.1	21798944
AT1G22840.1	EER95833	AT4G08150.1	21798944
AT1G22840.1	OQU90921	AT4G08150.1	21798944
AT1G22840.1	OQU91064	AT4G08150.1	21798944
AT4G10040.1	EER89528	AT3G29575.1	21798944
AT4G10040.1	EER92642	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010236_P001	Maize	plastid	98.21	98.21
Zm00001d038218_P001	Maize	mitochondrion	97.32	97.32
CDY12506	Canola	cytosol	92.86	92.86
CDY25756	Canola	cytosol	92.86	92.86
Bra012346.1-P	Field mustard	cytosol	92.86	92.86
Bra024541.1-P	Field mustard	cytosol	91.96	91.96
EES03996	Sorghum	cytosol	91.96	91.96
CDY04780	Canola	cytosol	91.96	91.96
CDY21393	Canola	cytosol	91.96	91.96
AT4G10040.1	Thale cress	cytosol	91.07	91.07
Bra000699.1-P	Field mustard	cytosol	91.07	91.07
CDX90744	Canola	cytosol	91.07	91.07
TraesCS1A01G263300.1	Wheat	extracellular, unclear	91.07	90.27
TraesCS1D01G263400.1	Wheat	cytosol	91.07	90.27
CDY05083	Canola	cytosol	90.18	90.18
Bra037901.1-P	Field mustard	cytosol	80.36	90.0
AT1G22840.1	Thale cress	cytosol	91.07	89.47
CDX99521	Canola	cytosol	80.36	84.91
TraesCS1B01G273900.1	Wheat	cytosol	77.68	76.99
HORVU1Hr1G063940.1	Barley	cytosol, mitochondrion, nucleus, plastid	91.07	60.71
KXG27531	Sorghum	mitochondrion	80.36	57.32

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.4.1	EntrezGene:8076974	UniProt:C5YY64	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf
InterPro:Cyt_c_1A/1B	EnsemblPlants:EES18250	ProteinID:EES18250	ProteinID:EES18250.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005758	GO:GO:0006091	GO:GO:0006122	GO:GO:0006123	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0046872
GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909	PFAM:PF00034	PRINTS:PR00604
PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	EnsemblPlantsGene:SORBI_3009G141800	SUPFAM:SSF46626	unigene:Sbi.6894
UniParc:UPI0001A88784	RefSeq:XP_002439820.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:49906210..49909337

Molecular Weight (calculated)

12166.5 Da

IEP (calculated)

9.934

GRAVY (calculated)

-0.651

Length

112 amino acids

Sequence
(BLAST)

001: MASFSEAPPG NPKAGEKIFK TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTAGYSYSAG NKNKAVVWEE NTLYDYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLIAYLKEA TA

Best Arabidopsis Sequence Match ( AT1G22840.1 )
(BLAST)

001: MASFDEAPPG NAKAGEKIFR TKCAQCHTVE AGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KALYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TAPK

Arabidopsis Description

CYTC-1CYTC-1 [Source:UniProtKB/TrEMBL;Acc:A0A178W284]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.