CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89055
EER91079
EER92018
EER92948
EER94592
EES03882
EES03931
EES08513
EES11304
EES17536
EES18304
EES18336
KXG20488
KXG24130
KXG31078
KXG35813
KXG38947
KXG40303
KXG40306
OQU81040
OQU82538
OQU84501
OQU85631

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08150.1	EES17536	AT1G22630.1	21798944
AT4G08150.1	KXG40306	AT1G62990.1	15781858
AT4G08150.1	EER91079	AT2G16400.1	15781858
AT4G08150.1	KXG24130	AT2G16400.1	15781858
AT4G08150.1	OQU81040	AT2G22680.1	21798944
AT4G08150.1	EER92948	AT3G52525.1	15781858
AT4G08150.1	EER94592	AT3G52525.1	15781858
AT4G08150.1	EES03931	AT3G52525.1	15781858
AT4G08150.1	EES11304	AT3G52525.1	15781858
AT4G08150.1	EES18304	AT3G52525.1	15781858
AT4G08150.1	OQU85631	AT3G52525.1	15781858
AT4G08150.1	KXG35813	AT4G08520.1	21798944
AT4G08150.1	KXG31078	AT4G12450.1	21798944
AT4G08150.1	KXG38947	AT4G12450.1	21798944
AT4G08150.1	EES03882	AT5G02030.1	12897247
AT4G08150.1	EES18336	AT5G02030.1	12897247
AT4G08150.1	EES03882	AT5G02030.1	15019989
AT4G08150.1	EES18336	AT5G02030.1	15019989
AT4G08150.1	EES03882	AT5G02030.1	15781858
AT4G08150.1	EES18336	AT5G02030.1	15781858
AT4G08150.1	KXG20488	AT5G11060.1	15781858
AT4G08150.1	OQU84501	AT5G11060.1	15781858
AT4G08150.1	EER89055	AT5G41410.1	11701881
AT4G08150.1	EER92018	AT5G41410.1	11701881
AT4G08150.1	KXG40303	AT5G41410.1	11701881
AT4G08150.1	EER89055	AT5G41410.1	15781858
AT4G08150.1	EER92018	AT5G41410.1	15781858
AT4G08150.1	KXG40303	AT5G41410.1	15781858
AT4G08150.1	EER89055	AT5G41410.1	17873098
AT4G08150.1	EER92018	AT5G41410.1	17873098
AT4G08150.1	KXG40303	AT5G41410.1	17873098
AT4G08150.1	OQU82538	AT5G50100.1	21798944
AT4G08150.1	EES08513	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033861_P001	Maize	nucleus	87.06	89.72
Os03t0727200-00	Rice	nucleus	65.5	66.58
GSMUA_Achr5P01960_001	Banana	nucleus	30.46	58.85
CDY34012	Canola	nucleus	29.92	57.51
GSMUA_Achr4P28270_001	Banana	nucleus	39.89	54.61
GSMUA_Achr7P08050_001	Banana	nucleus	38.81	54.14
EER95833	Sorghum	nucleus	44.47	46.35
GSMUA_Achr2P13200_001	Banana	nucleus	43.67	46.15
GSMUA_Achr6P04640_001	Banana	nucleus	44.2	45.94
Solyc04g077210.2.1	Tomato	nucleus	43.4	45.35
EER90950	Sorghum	nucleus	43.4	44.72
PGSC0003DMT400012712	Potato	nucleus	43.4	44.72
OQU90921	Sorghum	nucleus	41.78	44.41
VIT_18s0001g08380.t01	Wine grape	nucleus	43.94	44.05
KRH61471	Soybean	nucleus	42.05	43.21
GSMUA_Achr4P32230_001	Banana	nucleus	40.16	43.19
EES00633	Sorghum	nucleus	33.69	42.52
KRH15482	Soybean	nucleus	43.94	42.34
Bra000638.1-P	Field mustard	nucleus	43.94	42.12
EES18954	Sorghum	nucleus	34.23	41.91
KRG88661	Soybean	nucleus	43.67	41.86
EER91090	Sorghum	nucleus	37.2	41.32
AT4G08150.1	Thale cress	nucleus	43.67	40.7
CDX83145	Canola	nucleus	43.94	40.55
CDY68624	Canola	nucleus	32.08	34.1
OQU84501	Sorghum	nucleus	24.53	29.74
KXG20488	Sorghum	nucleus	24.53	28.53
KXG40306	Sorghum	nucleus	20.75	23.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	UniProt:A0A1Z5S565	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	EnsemblPlants:OQU91064	ProteinID:OQU91064	ProteinID:OQU91064.1
PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF87	SMART:SM00389	SMART:SM01188	SMART:SM01255
SMART:SM01256	EnsemblPlantsGene:SORBI_3001G106000	SUPFAM:SSF46689	UniParc:UPI00026630B3	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:8143601..8150285

Molecular Weight (calculated)

40471.7 Da

IEP (calculated)

6.753

GRAVY (calculated)

-0.558

Length

371 amino acids

Sequence
(BLAST)

001: MEDLSDLGGR GHLGAATSRR PAPPSLPSSS SSKVSVQVYT VPSSSAAGGG GEAAARAQGG VAPLIHASSS VGGHGGRVAD LLDPIKAKIV SHPRYHRLLA
101: AFLDCHKVGC PPEAAEEIAA AAREREAWQR AAVGDAHNTR PDPELDQFME SYSELLVAWK EELTRPLREA KEFLTTVELQ LNSITNTGPP MGALISSAAE
201: DNTGLDMSDD DQEEGSGGME AEAALGIDPC SDDKELKKQL LRKYSGCLGN LRKELCKKRK KGKLPKEARQ KLLSWWELHY RWPYPSEMEK IALAESTGLE
301: QKQINNWFIN QRKRHWKPSE EMQFAVMDGF HPGAPPNAAA FYVDARLVGA TPAMFYARPE HGAHHGLWHN N

Best Arabidopsis Sequence Match ( AT4G08150.1 )
(BLAST)

001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP

Arabidopsis Description

KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.