CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90950
EER91090
EER95833
KXG20488
KXG40306
OQU84501
OQU90921
OQU91064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16400.1	KXG40306	AT1G62990.1	15781858
AT2G16400.1	EER90950	AT4G08150.1	15781858
AT2G16400.1	EER91090	AT4G08150.1	15781858
AT2G16400.1	EER95833	AT4G08150.1	15781858
AT2G16400.1	OQU90921	AT4G08150.1	15781858
AT2G16400.1	OQU91064	AT4G08150.1	15781858
AT2G16400.1	EER90950	AT4G08150.1	21798944
AT2G16400.1	EER91090	AT4G08150.1	21798944
AT2G16400.1	EER95833	AT4G08150.1	21798944
AT2G16400.1	OQU90921	AT4G08150.1	21798944
AT2G16400.1	OQU91064	AT4G08150.1	21798944
AT2G16400.1	KXG20488	AT4G32040.1	15781858
AT2G16400.1	OQU84501	AT4G32040.1	15781858
AT2G16400.1	KXG20488	AT5G25220.1	15781858
AT2G16400.1	OQU84501	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0636200-01	Rice	nucleus	85.71	87.17
TraesCS5A01G007800.1	Wheat	nucleus	84.65	85.69
TraesCS5D01G013300.1	Wheat	nucleus	84.19	85.23
HORVU5Hr1G001090.1	Barley	nucleus	83.13	84.28
TraesCS5B01G006400.1	Wheat	nucleus	84.5	82.62
Zm00001d031182_P002	Maize	nucleus	81.46	80.24
EER91079	Sorghum	nucleus	73.25	74.27
GSMUA_Achr1P23300_001	Banana	extracellular	36.93	56.25
GSMUA_Achr9P21580_001	Banana	nucleus	42.25	50.92
CDY02261	Canola	nucleus	33.43	49.0
Bra013076.1-P	Field mustard	nucleus	33.43	48.89
Bra013075.1-P	Field mustard	nucleus	31.61	48.83
CDX89711	Canola	nucleus	33.43	48.35
GSMUA_Achr4P13590_001	Banana	nucleus	41.79	48.33
GSMUA_Achr3P29230_001	Banana	nucleus	33.13	48.23
AT2G16400.1	Thale cress	nucleus	34.35	46.89
CDY46209	Canola	nucleus	26.6	46.3
GSMUA_Achr4P06630_001	Banana	nucleus	39.51	45.94
VIT_03s0038g00050.t01	Wine grape	nucleus	47.57	45.3
Bra001976.1-P	Field mustard	nucleus	30.24	44.82
Bra017666.1-P	Field mustard	nucleus	35.71	44.51
AT4G34610.3	Thale cress	nucleus	35.11	43.42
EER92806	Sorghum	nucleus	37.69	42.03
CDX71279	Canola	nucleus	22.8	38.66
CDY45321	Canola	nucleus, plastid	32.52	31.24
KXG37846	Sorghum	nucleus	16.87	31.18
EES09309	Sorghum	nucleus	32.22	30.72
EER89055	Sorghum	nucleus	23.86	29.96
GSMUA_Achr2P06420_001	Banana	nucleus	15.81	28.18
EER92018	Sorghum	nucleus	25.68	26.66
KXG40303	Sorghum	nucleus	24.32	25.56
EER93512	Sorghum	nucleus, plastid	29.33	25.06
EES18336	Sorghum	nucleus	20.97	24.21
EES03882	Sorghum	nucleus	20.82	23.1
KXG20197	Sorghum	nucleus	15.2	20.24
EES04785	Sorghum	nucleus	16.26	18.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	EntrezGene:8071537	UniProt:C5YT09	ncoils:Coil	ProteinID:EES17492.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
EnsemblPlants:KXG24130	ProteinID:KXG24130	ProteinID:KXG24130.1	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF191	SMART:SM00389	SMART:SM00574	EnsemblPlantsGene:SORBI_3008G188900
SUPFAM:SSF46689	unigene:Sbi.1439	UniParc:UPI0001A88B9B	RefSeq:XP_002443654.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:62311403..62316497

Molecular Weight (calculated)

73135.7 Da

IEP (calculated)

5.737

GRAVY (calculated)

-0.711

Length

658 amino acids

Sequence
(BLAST)

001: MMATYYSSQG SERDSQNMYS REPSNASYPM SSALGNLLYL NNPASGPYTE FSGILQSQQN CMEMPEPGHP SVMSQDSSAR ESDMLGSHQG QRSFGLVKDM
101: KNEMLMHMMD GSQSSTADLI HDDAQNGIQL DFGVLNNHGS SNIPSVQGQG LSLSLNTQIL APSLPYWSVK PDMLSPHSYH DSLRVDDIRM KSMQSESSRA
201: IRNSRYLKAA QELLDEVVNV WKNIKQKAQK EQVEAGKTDG KETEGGPKSE GVSSNPQESG ANAAPELSTA EKQELQNKMA KLMAMLDEVD RKYKHYYHQM
301: QSVVSSFDMV AGPGAAKPYT AVALQTISRH FRCLKDAIND QINVIRKKLG EEESSSGKEG KLTRLRYIDQ QLRQQRAFQQ YGMIPQNAWR PQRGLPENSV
401: TILRAWLFEH FLHPYPKDSE KLMLARQTGL TRSQISNWFI NARVRLWKPM IEDMYKEEIG DIEQDSNSSS DNTPRSKGKM VSSEDKEDPR SCTPRVCESS
501: QLSESRGSMR TMNAVGGGAA MGFQNEPNPD DTFMNLMLKD QRSNGEEDGG LLLHNAVAQH QDENARFMAY HLAELGRYGN GNVSLTLGLQ HSSSSSLSVP
601: NAQQSFPGVG VGVGDDDIYN AAAAPLGVSV ASSDYETMNQ MDQRQRFEQS PLLHDFVA

Best Arabidopsis Sequence Match ( AT4G34610.2 )
(BLAST)

001: MENYPETQFI PGDSMIQNAI VSYSEESAGR ERRTEANNVS ASQERQALSR FGGVPQMQNI GQDFGSWRDQ ASDRNGFQLM SAMAGATGIL QTGQGLSLSL
101: GSQILPGIHQ ISHQNMAPRG NEYATQSFPG GNQNLDVVRT IPNSKYLKAA QQLLDEAVNV KKALKQFQAE GDKNNENPQE PNQSTQDSST NPPADISQSE
201: RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVLRKCLGE QQDGSDGKRV GIISRLKYVD
301: QHLRQQRGFM QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKM
401: SEIGPVAADD EDRAREFSQD QTKPDHGHGY GEETRGMVQG SHMDGRRFMA VEPTYHVADT SRLGRGDVSL TLGLQNSQGQ DNVVAMSSEA YNNFSGVDIY
501: ENAIPGDEME YVNPGSRQNR INSSQLVHDF VA

Arabidopsis Description

BLH6BEL1-like homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O65685]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.