Factsheet for VIT_03s0038g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04630.t01
VIT_04s0008g06130.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16400.1	VIT_02s0025g04630.t01	AT1G62990.1	15781858
AT2G16400.1	VIT_18s0001g08380.t01	AT4G08150.1	15781858
AT2G16400.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT2G16400.1	VIT_04s0008g06130.t01	AT4G32040.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P23300_001	Banana	extracellular	40.96	65.51
GSMUA_Achr9P21580_001	Banana	nucleus	49.49	62.64
CDY02261	Canola	nucleus	38.06	58.57
Bra013076.1-P	Field mustard	nucleus	37.92	58.22
GSMUA_Achr4P13590_001	Banana	nucleus	47.61	57.82
CDX89711	Canola	nucleus	37.92	57.58
Bra013075.1-P	Field mustard	nucleus	35.31	57.28
GSMUA_Achr3P29230_001	Banana	nucleus	37.34	57.08
AT2G16400.1	Thale cress	nucleus	38.49	55.19
CDY46209	Canola	nucleus	30.1	55.03
Bra001976.1-P	Field mustard	nucleus	33.43	52.03
GSMUA_Achr4P06630_001	Banana	nucleus	41.97	51.24
Bra017666.1-P	Field mustard	nucleus	38.78	50.76
AT4G34610.3	Thale cress	nucleus	39.07	50.75
VIT_18s0001g13150.t01	Wine grape	nucleus	49.49	49.0
TraesCS4A01G289400.1	Wheat	nucleus	44.14	47.81
Os12t0636200-01	Rice	nucleus	44.72	47.76
EER91079	Sorghum	nucleus	44.72	47.61
KXG24130	Sorghum	nucleus	45.3	47.57
TraesCS4D01G022600.1	Wheat	nucleus	43.85	47.49
Zm00001d013547_P002	Maize	nucleus	43.7	47.26
TraesCS4B01G025500.1	Wheat	nucleus	43.42	46.95
HORVU4Hr1G003800.7	Barley	nucleus	43.7	46.89
CDX71279	Canola	nucleus	26.19	46.65
TraesCS5D01G013300.1	Wheat	nucleus	43.56	46.31
Zm00001d033378_P003	Maize	nucleus	43.56	46.24
TraesCS5A01G007800.1	Wheat	nucleus	43.42	46.15
HORVU5Hr1G001090.1	Barley	nucleus	42.55	45.3
TraesCS5B01G006400.1	Wheat	nucleus	43.99	45.17
Zm00001d031182_P002	Maize	nucleus	43.56	45.06
Os03t0680800-02	Rice	nucleus	43.7	44.74
VIT_18s0001g13130.t01	Wine grape	nucleus	26.63	39.15
VIT_18s0001g11800.t01	Wine grape	nucleus	19.68	38.97
VIT_08s0105g00230.t01	Wine grape	nucleus	34.59	38.3
VIT_06s0009g00410.t01	Wine grape	nucleus	38.06	36.13
CDY45321	Canola	nucleus, plastid	35.17	35.47
GSMUA_Achr2P06420_001	Banana	nucleus	16.79	31.44
VIT_02s0025g00200.t01	Wine grape	nucleus	28.94	30.96
VIT_13s0019g02450.t01	Wine grape	nucleus	20.98	29.12
VIT_08s0007g01290.t01	Wine grape	nucleus	23.73	25.55
VIT_06s0004g02580.t01	Wine grape	nucleus	25.47	23.47
VIT_04s0023g01020.t01	Wine grape	nucleus	28.08	22.93
VIT_04s0008g00880.t01	Wine grape	nucleus	19.54	22.92

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100262246	wikigene:100262246	MapMan:15.5.3.5	EMBL:AM436871	ProteinID:CAN62866
ProteinID:CAN62866.1	ProteinID:CCB60726	ProteinID:CCB60726.1	ncoils:Coil	UniProt:F6I1B0	EMBL:FN596508
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100262246	wikigene:LOC100262246	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071
PANTHER:PTHR11850	PANTHER:PTHR11850:SF65	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	TIGR:TC65716
UniParc:UPI000210AA8A	ArrayExpress:VIT_03s0038g00050	EnsemblPlantsGene:VIT_03s0038g00050	EnsemblPlants:VIT_03s0038g00050.t01	unigene:Vvi.2355	RefSeq:XP_003631586
RefSeq:XP_003631586.1	RefSeq:XP_010647690.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:40973..47714

Molecular Weight (calculated)

75363.0 Da

IEP (calculated)

6.588

GRAVY (calculated)

-0.591

Length

691 amino acids

Sequence
(BLAST)

001: MATYYPSSNN QRDAAPMHYL REPLPTSYSE VPVLPTNMMY MSYPSSSGSY SDTLAGNAQQ HNHNCIEIPS VAASDSTQPQ HEILSSLSGS HIVEHDFSAW
101: RDGKNEMLVM NSLGGPASLL HTGQHLQAQG LSLSLGTQIP SGIQIPSIQY RNPNQGFTSF LSPTSSVSGE GGGRNGSSRD EQLRNAEFLP PGVLGANQDS
201: IKVDPSSYGM SSIARTIPHS KYLKAAQQLL DEVVNVRKAL KQPDSEKNQN IHELWKGSKE ADVGLKNGTG MTPAASNPQE PVSNSSSELS PAERQDLQNK
301: LTKLLAMLDE VDRRYKQYYH QMQIVVSSFD VIAGSGAAKP YTALALQTIS RHFRCLRDAI TGQIRATRRS LGEQDTSGNG KGVGISRLRY VDQQLRQQRA
401: LQQLGMMQQH AWRPQRGLPE SSVSILRAWL FEHFLHPYPK DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EIGDADMDSN SSSENAPKAT
501: KSDIRASEER GDDFQPSTTS TVTERCSTGR FLDSKSSNAP DVEMGGPTAG ASFRNGERGE TQTEYGIVKL SGDQRPSVEE CSSLFPDGIV QSDGGSDRFM
601: AAAAAAYHMS ELGRFGSGTG VSLTLGLQHC EGGSLPISNG GHHSFVGMRG ADMYNPAASS VGTDTADFDC MDPGNRQHRF SSSHLLHDFV A

Best Arabidopsis Sequence Match ( AT4G34610.2 )
(BLAST)

001: MENYPETQFI PGDSMIQNAI VSYSEESAGR ERRTEANNVS ASQERQALSR FGGVPQMQNI GQDFGSWRDQ ASDRNGFQLM SAMAGATGIL QTGQGLSLSL
101: GSQILPGIHQ ISHQNMAPRG NEYATQSFPG GNQNLDVVRT IPNSKYLKAA QQLLDEAVNV KKALKQFQAE GDKNNENPQE PNQSTQDSST NPPADISQSE
201: RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVLRKCLGE QQDGSDGKRV GIISRLKYVD
301: QHLRQQRGFM QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKM
401: SEIGPVAADD EDRAREFSQD QTKPDHGHGY GEETRGMVQG SHMDGRRFMA VEPTYHVADT SRLGRGDVSL TLGLQNSQGQ DNVVAMSSEA YNNFSGVDIY
501: ENAIPGDEME YVNPGSRQNR INSSQLVHDF VA

Arabidopsis Description

BLH6BEL1-like homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O65685]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.