Factsheet for VIT_18s0001g13130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03140_001	Banana	nucleus	10.64	64.94
KRH61118	Soybean	nucleus	60.21	64.32
KRH51793	Soybean	nucleus	59.79	62.86
CDX73171	Canola	nucleus	35.11	57.09
AT1G75430.1	Thale cress	nucleus	35.11	56.9
CDY47523	Canola	nucleus	34.89	56.75
Bra015844.1-P	Field mustard	nucleus	34.68	56.4
Solyc04g080780.2.1	Tomato	nucleus	39.57	46.5
PGSC0003DMT400009609	Potato	nucleus	40.64	45.15
Os03t0680700-00	Rice	nucleus	25.11	34.1
HORVU4Hr1G003750.1	Barley	nucleus	24.68	33.92
Zm00001d033379_P001	Maize	nucleus	25.53	33.9
KXG37846	Sorghum	nucleus	24.68	32.58
TraesCS4A01G289500.1	Wheat	nucleus	25.11	31.72
TraesCS4D01G022500.1	Wheat	nucleus	25.11	31.64
TraesCS4B01G025400.1	Wheat	nucleus	24.89	31.37
VIT_18s0001g11800.t01	Wine grape	nucleus	20.85	28.08
VIT_03s0038g00050.t01	Wine grape	nucleus	39.15	26.63
VIT_08s0105g00230.t01	Wine grape	nucleus	31.28	23.56
VIT_18s0001g13150.t01	Wine grape	nucleus	34.89	23.5
VIT_06s0009g00410.t01	Wine grape	nucleus	35.74	23.08
VIT_13s0019g02450.t01	Wine grape	nucleus	23.62	22.29
VIT_02s0025g00200.t01	Wine grape	nucleus	28.94	21.05
VIT_04s0008g00880.t01	Wine grape	nucleus	24.26	19.35
VIT_06s0004g02580.t01	Wine grape	nucleus	29.79	18.67
VIT_08s0007g01290.t01	Wine grape	nucleus	25.32	18.54
VIT_04s0023g01020.t01	Wine grape	nucleus	31.06	17.26

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100252354	wikigene:100252354	MapMan:15.5.3.5	ProteinID:CBI19758	ProteinID:CBI19758.3
ncoils:Coil	UniProt:E0CQI9	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100252354	wikigene:LOC100252354	PFAM:PF05920
PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF132	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI00015C7AB6	ArrayExpress:VIT_18s0001g13130	EnsemblPlantsGene:VIT_18s0001g13130	EnsemblPlants:VIT_18s0001g13130.t01
unigene:Vvi.21799	RefSeq:XP_002281033	RefSeq:XP_002281033.1	RefSeq:XP_010664732.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:11196526..11198302

Molecular Weight (calculated)

52268.2 Da

IEP (calculated)

6.201

GRAVY (calculated)

-0.404

Length

470 amino acids

Sequence
(BLAST)

001: MVSQESSPNP TSSILHQFII SDSFTSPNQF ENHHFDAYGS HLRGSNTFPQ SLGVLPSIQS LGERMSRSID LVQAPAVGEE SEISHTRHFM DLLGAANESN
101: HQAHRLSLSL GSHVLMPSVH YRQRPLNSDF VSSNYLFSGE EAREACNPGV ERLCDDYSYV SSAFATPSTS LNRSCSTSYG TESFVNAVGN SRYLRPTQSL
201: LEEVVNAGGK AIDLSNEKYI GRLSRSGRRG ALGFASELKA ELCGNGSLSA EKQDIQIEIA KLIGLLEEVE SRYEEYYHQM EDVVSSFEVI AGVGAAKSYT
301: ALALQAMFRH FCSLRDAIIS QINVARRKLS HDLPKISTGF SQLSLFDQEG RNNRMTLQQL GMFQSHRQAW RPIRGLPETS VAILRSWLFE HFLHPYPNDS
401: EKLMLASQTG LTKNQVSNWF INARVRLWKP MIEEMYKEEF AESSVESDPL VASSSTREGG ASDNGEGWKG

Best Arabidopsis Sequence Match ( AT1G75430.1 )
(BLAST)

001: MEDFRVRHEC SSLRGTLLDS RYAKAVQCLV EEVIDIGGRE VELCNNILIN QLFPGRRRPG FALSSEIKSE LCSSGFMSLP ENHEIHIKIT KLLSLLQQVE
101: ERFEQYCNQL EQVISSFEEI AGEGSSKVYT GLALQAMTRH FGSLEEAIIS QLNSVRRRFI ISHQDVPKII SSGLSQLSLF DGNTTSSSLQ RLGLVQGPQR
201: HAWKPIRGLP ETSVAILRAW LFQHFLHPYP NEAEKLVLAS QTGLSKNQVS NWFINARVRL WKPMIEEMYR EEFGDSLDES MQREANDDSN

Arabidopsis Description

BLH11Uncharacterized protein At1g75430 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV32]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.