Factsheet for VIT_06s0009g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26689	Soybean	nucleus	48.21	67.89
KRH22635	Soybean	nucleus	57.83	59.97
VIT_08s0105g00230.t01	Wine grape	nucleus	50.41	58.81
KRH25319	Soybean	nucleus	54.4	53.44
KRG88864	Soybean	nucleus	54.81	52.23
PGSC0003DMT400050527	Potato	nucleus	49.86	51.42
PGSC0003DMT400015183	Potato	nucleus	48.08	51.17
Solyc06g074120.2.1	Tomato	nucleus	48.9	50.93
Solyc11g068950.1.1	Tomato	nucleus	44.92	49.47
Os11t0158600-00	Rice	nucleus	27.75	48.1
TraesCS4B01G114600.1	Wheat	nucleus	40.93	45.02
TraesCS4D01G111900.1	Wheat	nucleus	40.8	44.73
TraesCS4A01G200800.1	Wheat	nucleus	40.8	44.73
Zm00001d053151_P003	Maize	nucleus	41.07	44.56
EES09309	Sorghum	nucleus	41.62	43.91
HORVU4Hr1G020710.1	Barley	nucleus	31.18	43.65
Os11t0158832-00	Rice	nucleus	14.42	39.92
VIT_18s0001g11800.t01	Wine grape	nucleus	18.96	39.54
VIT_03s0038g00050.t01	Wine grape	nucleus	36.13	38.06
VIT_18s0001g13130.t01	Wine grape	nucleus	23.08	35.74
AT2G27220.2	Thale cress	nucleus	21.98	35.63
CDX77099	Canola	nucleus	21.7	35.19
Bra034335.1-P	Field mustard	nucleus	21.43	34.82
CDY30566	Canola	nucleus	21.29	34.6
VIT_18s0001g13150.t01	Wine grape	nucleus	31.59	32.95
VIT_02s0025g00200.t01	Wine grape	nucleus	27.34	30.8
VIT_13s0019g02450.t01	Wine grape	nucleus	20.74	30.32
VIT_08s0007g01290.t01	Wine grape	nucleus	23.49	26.64
VIT_04s0023g01020.t01	Wine grape	nucleus	28.3	24.35
VIT_06s0004g02580.t01	Wine grape	nucleus	24.31	23.6
VIT_04s0008g00880.t01	Wine grape	nucleus	18.96	23.43

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100259827	wikigene:100259827	MapMan:15.5.3.5	EMBL:AM441373	ProteinID:CAN69527
ProteinID:CAN69527.1	ProteinID:CCB49204	ProteinID:CCB49204.1	ncoils:Coil	UniProt:F6HAC5	EMBL:FN595504
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100259827	wikigene:LOC100259827	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071
PANTHER:PTHR11850	PANTHER:PTHR11850:SF135	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	TIGR:TC55488
TIGR:TC57618	UniParc:UPI00015C983A	ArrayExpress:VIT_06s0009g00410	EnsemblPlantsGene:VIT_06s0009g00410	EnsemblPlants:VIT_06s0009g00410.t01	unigene:Vvi.12850
RefSeq:XP_002275098	RefSeq:XP_002275098.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:10835034..10839722

Molecular Weight (calculated)

78905.4 Da

IEP (calculated)

7.281

GRAVY (calculated)

-0.601

Length

728 amino acids

Sequence
(BLAST)

001: MATYFHGSSE IQADGLQTLY LMNPNYIGYS DTQQPSAANM LFLNATPNSL NPTNLPNMSL QNQHFVGIPL PNMGSANSDD QNRSSLHAQP EMSSLQGIVP
101: RFHYNLWGST DQNPTGNQPQ IPTAVAAASS GGAADVTSQL GLRRQVVSPT QQGLSLSLSP HQPTYRSVPG EHDIQVQQQP PVQAISPTSG DDMRVSGGSS
201: STASAVSNGI SGMQSVLLGS KYLKAAQQLL DEVANVGKGI KTDSGEETKE REKVNTISVA ASTGEALSGG ESSAKRGAEL STAQRQELQM KKAKLVNMLD
301: EVEQRYRQYH QQMQIVVSSF EQAAGQGSAK SYTALALQTI SKQFRCLKDA ISAQIKATSS SLGEEDCSGG KVEGSRLRFV DHQLRQQRAL QQLGMIQHNA
401: WRPQRGLPER AVSVLRAWLF EHFLHPYPKD SDKHMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYLEE IKDQEHNGSQ DNASKSEANK ELGSKSTAAQ
501: ESGATRVDQT NDFQSKQEKS TTQNASPAEL SNSTMSTSPM GGSLQVQAGF NLIGSSEIEG MVQRSPKKPR SYDIQSSPSS ILSMDMEMKP GGTSREISMK
601: FGSERQAKDG YPLITGAINN GGGFGAYSPI GDIGRFNPEQ LAPRFHGNSV SLTLGLPHCE NLSLSGSQQS YLSNPNVQLG RRLEMGNGEP DYCGINAAQP
701: SHSNAAYDSI NIQNRKRFAA QLLPDFVA

Best Arabidopsis Sequence Match ( AT2G35940.3 )
(BLAST)

001: MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQQDND SNNNNNSNNS NNNNTNTNTN NNNSSFVFLD SHAPQPNASQ QFVGIPLSGH EAASITAADN
101: ISVLHGYPPR VQYSLYGSHQ VDPTHQQAAC ETPRAQQGLS LTLSSQQQQQ QQHHQQHQPI HVGFGSGHGE DIRVGSGSTG SGVTNGIANL VSSKYLKAAQ
201: ELLDEVVNAD SDDMNAKSQL FSSKKGSCGN DKPVGESSAG AGGEGSGGGA EAAGKRPVEL GTAERQEIQM KKAKLSNMLH EVEQRYRQYH QQMQMVISSF
301: EQAAGIGSAK SYTSLALKTI SRQFRCLKEA IAGQIKAANK SLGEEDSVSG VGRFEGSRLK FVDHHLRQQR ALQQLGMIQH PSNNAWRPQR GLPERAVSVL
401: RAWLFEHFLH PYPKDSDKHM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYMEEMKEQA KNMGSMEKTP LDQSNEDSAS KSTSNQEKSP MADTNYHMNP
501: NHNGDLEGVT GMQGSPKRLR TSDETMMQPI NADFSSNEKL TMKILEERQG IRSDGGYPFM GNFGQYQMDE MSRFDVVSDQ ELMAQRYSGN NNGVSLTLGL
601: PHCDSLSSTH HQGFMQTHHG IPIGRRVKIG ETEEYGPATI NGGSSTTTAH SSAAAAAAYN GMNIQNQKRY VAQLLPDFVA

Arabidopsis Description

BLH1BEL1-like homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.