Factsheet for VIT_18s0001g13150.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83753	Canola	nucleus	15.62	57.37
VIT_03s0038g00050.t01	Wine grape	nucleus	49.0	49.49
KRH05875	Soybean	nucleus	43.12	49.26
KRH51792	Soybean	nucleus	44.84	49.14
KRH15136	Soybean	nucleus	44.7	49.06
KRH61114	Soybean	nucleus	44.7	48.3
Bra025758.1-P	Field mustard	nucleus	25.36	45.5
CDY29411	Canola	nucleus	25.36	45.5
Bra008197.1-P	Field mustard	nucleus	30.23	45.18
CDY52073	Canola	nucleus	30.37	45.01
CDY39031	Canola	nucleus	30.23	44.14
CDX73170	Canola	nucleus	32.09	43.58
Bra015845.1-P	Field mustard	nucleus	32.09	43.16
CDY47524	Canola	nucleus	31.81	43.02
Bra003753.1-P	Field mustard	nucleus	28.94	42.71
CDX68129	Canola	nucleus	28.94	42.71
CDY63699	Canola	nucleus	25.07	41.87
AT1G75410.2	Thale cress	nucleus	30.95	41.22
Bra016497.1-P	Field mustard	nucleus	29.08	40.6
CDX96653	Canola	nucleus	29.23	40.32
CDY39359	Canola	nucleus	29.94	40.27
CDX85896	Canola	nucleus	28.94	40.16
PGSC0003DMT400009610	Potato	nucleus	37.39	39.49
AT1G19700.3	Thale cress	nucleus	30.23	39.22
Solyc04g080790.2.1	Tomato	nucleus	36.96	39.03
VIT_18s0001g11800.t01	Wine grape	nucleus	18.48	36.96
VIT_18s0001g13130.t01	Wine grape	nucleus	23.5	34.89
VIT_08s0105g00230.t01	Wine grape	nucleus	29.8	33.33
VIT_06s0009g00410.t01	Wine grape	nucleus	32.95	31.59
VIT_02s0025g00200.t01	Wine grape	nucleus	24.5	26.47
VIT_13s0019g02450.t01	Wine grape	nucleus	18.19	25.5
VIT_08s0007g01290.t01	Wine grape	nucleus	21.2	23.05
VIT_04s0023g01020.t01	Wine grape	nucleus	26.07	21.51
VIT_06s0004g02580.t01	Wine grape	nucleus	22.49	20.93
VIT_04s0008g00880.t01	Wine grape	nucleus	17.34	20.54

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100257488	wikigene:100257488	MapMan:15.5.3.5	EMBL:AM460734	ProteinID:CAN65696
ProteinID:CAN65696.1	ProteinID:CCB45981	ProteinID:CCB45981.1	ncoils:Coil	UniProt:F6H1K0	EMBL:FN595227
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100257488	wikigene:LOC100257488	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071
PANTHER:PTHR11850	PANTHER:PTHR11850:SF111	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI0002109538
ArrayExpress:VIT_18s0001g13150	EnsemblPlantsGene:VIT_18s0001g13150	EnsemblPlants:VIT_18s0001g13150.t01	RefSeq:XP_002281021	RefSeq:XP_002281021.2	SEG:seg

Description

No Description!

Coordinates

chr18:-:11201495..11206144

Molecular Weight (calculated)

76908.2 Da

IEP (calculated)

6.118

GRAVY (calculated)

-0.553

Length

698 amino acids

Sequence
(BLAST)

001: MSNSRREVLP TLNLPDLKLA SYPEQPLLPG NVMMYPNQTS SAGSYSGIFI GSSPSYHNHV EVPSAGVRNE VVYIPPTGDV SMQSVGLQLK NATGAPTGNF
101: VTGNPQIVPR TQLGILDAEQ NFLPQRLSLS LSTQIPSTVP LASFQYQYVN PGLSSRFGSY VSSSAERTIS CEGDESSQAK EFRNDEYLPS SFPGTDQSSV
201: KTEALCNPRY SEIPKVTGAD QCLYESFGPA NTVLNSKFLK SVQQLLDEVV NVRKTLKQQE FDKHHKFHGI GLNGSNENDE RSNNRTILSS PIGNSSDPNG
301: LVTNSSCKLS STERQDLEHK KAKLLSMLDE VDKRYKQYYD QTQIVGSFFD MLAGFGAAKT YMALALQRIS CHFRCLRDAI SGQIRITCRN LGEQDTSPNG
401: LGGGMSRLGY VDQQLRQQRA LQQFGGMRHA WRPQRGLPES SVSILRTWLF EHFLHPYPKD SEKIMLARQT GLTRSQVANW FINARVRLWK PMVEEIYKEE
501: IGDSETKSKS SPESPPKEPR DDSWASEDKG EELQETMTST AAAGGHLGQS HNMTSDFMRD VEMNGPTARM SFQKGAHGDV DTDCGIMKLQ GDQSSNMDDH
601: SLYLDEFVPT NQNGDGSLMA ATYHISELSD LGVGSQVSLA LGLRHCESDV PSISGGPLIR GGDIAASVGP DTAEYNCMDS GNQRHRFGKP HLIHDFVV

Best Arabidopsis Sequence Match ( AT4G34610.2 )
(BLAST)

001: MENYPETQFI PGDSMIQNAI VSYSEESAGR ERRTEANNVS ASQERQALSR FGGVPQMQNI GQDFGSWRDQ ASDRNGFQLM SAMAGATGIL QTGQGLSLSL
101: GSQILPGIHQ ISHQNMAPRG NEYATQSFPG GNQNLDVVRT IPNSKYLKAA QQLLDEAVNV KKALKQFQAE GDKNNENPQE PNQSTQDSST NPPADISQSE
201: RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVLRKCLGE QQDGSDGKRV GIISRLKYVD
301: QHLRQQRGFM QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKM
401: SEIGPVAADD EDRAREFSQD QTKPDHGHGY GEETRGMVQG SHMDGRRFMA VEPTYHVADT SRLGRGDVSL TLGLQNSQGQ DNVVAMSSEA YNNFSGVDIY
501: ENAIPGDEME YVNPGSRQNR INSSQLVHDF VA

Arabidopsis Description

BLH6BEL1-like homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O65685]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.