CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003753.1-P	Field mustard	nucleus	100.0	100.0
CDX85896	Canola	nucleus	92.6	87.08
CDY52073	Canola	nucleus	78.65	78.98
CDY39031	Canola	nucleus	78.65	77.82
CDX83753	Canola	nucleus	30.66	76.32
CDY47524	Canola	nucleus	82.66	75.78
CDX73170	Canola	nucleus	82.03	75.49
AT1G75410.2	Thale cress	nucleus	81.61	73.66
CDY29411	Canola	nucleus	53.7	65.3
CDY63699	Canola	nucleus	53.28	60.29
CDY39359	Canola	nucleus	65.96	60.12
CDX96653	Canola	nucleus	61.1	57.11
CDY21826	Canola	extracellular, plastid	9.09	44.79
CDX73171	Canola	nucleus	24.1	39.45
CDY47523	Canola	nucleus	23.89	39.1
CDY02261	Canola	nucleus	37.0	38.98
CDX89711	Canola	nucleus	37.42	38.9
CDY46209	Canola	nucleus	30.44	38.1
CDX75307	Canola	nucleus	17.34	36.94
KRH51792	Soybean	nucleus	45.24	33.59
CDY45383	Canola	nucleus	18.6	33.46
KRH61114	Soybean	nucleus	45.24	33.13
KRH15136	Soybean	nucleus	44.19	32.86
KRH05875	Soybean	nucleus	42.28	32.73
CDX71279	Canola	nucleus	24.74	30.15
Solyc04g080790.2.1	Tomato	nucleus	41.86	29.95
PGSC0003DMT400009610	Potato	nucleus	41.44	29.65
VIT_18s0001g13150.t01	Wine grape	nucleus	42.71	28.94
CDX77099	Canola	nucleus	24.95	26.28
CDY30566	Canola	nucleus	24.74	26.12
CDY40420	Canola	nucleus	34.46	25.79
CDY32069	Canola	nucleus	34.67	25.79
CDX84171	Canola	nucleus	31.29	25.17
CDY45321	Canola	nucleus, plastid	35.94	24.82
CDX76849	Canola	nucleus	31.08	24.46
CDY46061	Canola	nucleus	31.08	24.18
CDX84585	Canola	nucleus	34.04	23.99
CDX75085	Canola	nucleus	31.29	23.57
CDX79646	Canola	nucleus	34.04	23.3
CDY44476	Canola	nucleus	27.27	22.71
CDY39669	Canola	nucleus	30.66	22.48
CDY62523	Canola	nucleus	30.66	22.38
CDX69252	Canola	nucleus	31.29	22.19
CDX75604	Canola	nucleus	31.08	21.97
CDY22463	Canola	nucleus	31.08	21.94
CDY24765	Canola	nucleus	30.87	21.89
CDY40327	Canola	nucleus	26.43	21.63
CDY10473	Canola	nucleus	26.0	21.39
CDY69132	Canola	nucleus	25.79	21.25
CDY48107	Canola	nucleus	25.58	21.04
CDX68927	Canola	nucleus	20.51	21.04
CDX75313	Canola	nucleus	20.51	20.82
CDY13511	Canola	nucleus	18.82	20.37
CDY55113	Canola	nucleus	21.35	19.31
CDX72383	Canola	nucleus	18.18	19.03
CDX80798	Canola	nucleus	21.14	18.8
CDX68925	Canola	cytosol	6.98	18.23
CDX68906	Canola	nucleus	4.44	8.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078BWF1	EnsemblPlants:CDX68129	ProteinID:CDX68129	ProteinID:CDX68129.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00099377001	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF65	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689
UniParc:UPI00025415CE	SEG:seg	:	:	:	:

Description

BnaA07g21690D

Coordinates

chrLK031787:+:4041100..4043428

Molecular Weight (calculated)

53734.4 Da

IEP (calculated)

6.758

GRAVY (calculated)

-0.861

Length

473 amino acids

Sequence
(BLAST)

001: MSVYYQTNVG MQSLYQKPIY LNEQQQQQQA SSSSAGGGLE VPNSGGSVQD EMLFIPPTTS AGLNGSVTVS SNDLSFHGGG LSLSLGNQIQ YHYQNQLNYN
101: PSLSNENGKS PSSGYINGVG LYNNYRYETT GFVSSVLRSP YLKPTQLLLD EVVSVKKDSN KKIKNNDDKG QDFSENNTYN EELSSSERQE LQSKKNKLLT
201: VVNQVDQRYN QYHHQMEALA SSFEMVAGLG AAKPYTSVAL NKISRHFRCL RDALKEQIQV IRGKLGEDKE SCEEHGERIP RLRYLDQRLR QQRALHQQLG
301: MVRPSWRPQR GLPENSVSIL CAWLFEHFLH PYPKESEKIM LAKQTGLSKN QVANWFINAR VRLWKPMIEE MYKEEFGDSS SELLSNSNQD NNKKMQETSQ
401: FKHEDSSSSQ QQSHENNNVP YTSDADRATS GDYDSLMNYH QGFGVDDYNR YIGLGNQQDG RFSNPHQLHD FVV

Best Arabidopsis Sequence Match ( AT1G75410.1 )
(BLAST)

001: MAVYYPNSVG MQSLYQESIY LNEQQQQQQQ ASSSSAASFS EIVSGDVRNN EMVFIPPTSD VAVNGNVTVS SNDLSFHGGG LSLSLGNQIQ SAVSVSPFQY
101: HYQNLSNQLS YNNLNPSTMS DENGKSLSVH QHHSDQILPS SVYNNNGNNG VGFYNNYRYE TSGFVSSVLR SRYLKPTQQL LDEVVSVRKD LKLGNKKMKN
201: DKGQDFHNGS SDNITEDDKS QSQELSPSER QELQSKKSKL LTMVDEVDKR YNQYHHQMEA LASSFEMVTG LGAAKPYTSV ALNRISRHFR CLRDAIKEQI
301: QVIRGKLGER ETSDEQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ RGLPENSVSI LRAWLFEHFL HPYPKESEKI MLSKQTGLSK NQVANWFINA
401: RVRLWKPMIE EMYKEEFGES AELLSNSNQD TKKMQETSQL KHEDSSSSQQ QNQGNNNNNI PYTSDAEQNL VFADPKPDRA TTGDYDSLMN YHGFGIDDYN
501: RYVGLGNQQD GRYSNPHQLH DFVV

Arabidopsis Description

BLH3BEL1-like homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWS9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.