Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011403.1-P | Field mustard | nucleus | 99.14 | 99.14 |
| CDX75307 | Canola | nucleus | 46.35 | 97.3 |
| CDX68927 | Canola | nucleus | 94.42 | 95.44 |
| CDX68906 | Canola | nucleus | 47.85 | 86.1 |
| CDY13511 | Canola | nucleus | 77.68 | 82.84 |
| CDX72383 | Canola | nucleus | 79.61 | 82.08 |
| AT4G32980.1 | Thale cress | nucleus | 77.47 | 76.32 |
| CDX68925 | Canola | cytosol | 23.82 | 61.33 |
| CDY21826 | Canola | extracellular, plastid | 7.94 | 38.54 |
| VIT_04s0008g00880.t01 | Wine grape | nucleus | 45.92 | 36.33 |
| KRH52190 | Soybean | nucleus | 41.85 | 35.52 |
| KRH05496 | Soybean | nucleus | 42.7 | 34.85 |
| CDX83753 | Canola | nucleus | 14.16 | 34.74 |
| KRH61499 | Soybean | nucleus | 41.63 | 33.74 |
| PGSC0003DMT400076995 | Potato | nucleus | 39.06 | 33.7 |
| Solyc08g065420.2.1 | Tomato | nucleus | 39.48 | 32.92 |
| CDX73171 | Canola | nucleus | 17.81 | 28.72 |
| CDY47523 | Canola | nucleus | 17.81 | 28.72 |
| GSMUA_Achr4P02680_001 | Banana | nucleus | 33.48 | 26.94 |
| Zm00001d046223_P006 | Maize | nucleus | 25.54 | 24.24 |
| TraesCS7B01G269400.1 | Wheat | nucleus | 28.11 | 23.73 |
| TraesCS7A01G358300.1 | Wheat | nucleus | 28.11 | 23.69 |
| KXG20197 | Sorghum | nucleus | 25.11 | 23.68 |
| TraesCS7D01G364500.1 | Wheat | nucleus | 27.9 | 23.64 |
| Os02t0226600-01 | Rice | nucleus | 27.25 | 23.56 |
| Os06t0562300-00 | Rice | nucleus | 27.47 | 23.49 |
| CDY29411 | Canola | nucleus | 19.53 | 23.39 |
| Zm00001d016298_P001 | Maize | nucleus | 27.04 | 22.99 |
| CDY46209 | Canola | nucleus | 18.24 | 22.49 |
| CDY45383 | Canola | nucleus | 12.66 | 22.43 |
| EES04785 | Sorghum | nucleus | 26.82 | 22.16 |
| CDY02261 | Canola | nucleus | 21.03 | 21.83 |
| CDX89711 | Canola | nucleus | 21.24 | 21.76 |
| HORVU7Hr1G088090.4 | Barley | nucleus | 25.11 | 21.12 |
| CDY52073 | Canola | nucleus | 21.24 | 21.02 |
| CDY39031 | Canola | nucleus | 21.24 | 20.71 |
| CDX68129 | Canola | nucleus | 20.82 | 20.51 |
| Zm00001d002249_P001 | Maize | nucleus | 15.24 | 20.17 |
| CDX77099 | Canola | nucleus | 19.31 | 20.04 |
| CDY30566 | Canola | nucleus | 19.1 | 19.87 |
| CDX96653 | Canola | nucleus | 21.46 | 19.76 |
| CDX73170 | Canola | nucleus | 21.67 | 19.65 |
| CDX85896 | Canola | nucleus | 20.82 | 19.28 |
| CDY47524 | Canola | nucleus | 21.24 | 19.19 |
| CDY63699 | Canola | nucleus | 17.17 | 19.14 |
| CDY32069 | Canola | nucleus | 25.32 | 18.55 |
| CDY40420 | Canola | nucleus | 25.11 | 18.51 |
| CDY39359 | Canola | nucleus | 20.39 | 18.3 |
| CDX71279 | Canola | nucleus | 15.02 | 18.04 |
| CDX84171 | Canola | nucleus | 22.75 | 18.03 |
| CDX84585 | Canola | nucleus | 25.32 | 17.59 |
| CDX75085 | Canola | nucleus | 23.39 | 17.36 |
| CDY44476 | Canola | nucleus | 20.82 | 17.08 |
| CDX79646 | Canola | nucleus | 25.11 | 16.93 |
| CDX76849 | Canola | nucleus | 21.67 | 16.81 |
| CDY46061 | Canola | nucleus | 21.89 | 16.78 |
| CDY39669 | Canola | nucleus | 21.89 | 15.81 |
| CDY62523 | Canola | nucleus | 21.67 | 15.59 |
| CDY45321 | Canola | nucleus, plastid | 22.53 | 15.33 |
| CDY24765 | Canola | nucleus | 21.89 | 15.29 |
| CDY22463 | Canola | nucleus | 21.89 | 15.22 |
| CDX69252 | Canola | nucleus | 21.24 | 14.84 |
| CDY69132 | Canola | nucleus | 18.24 | 14.81 |
| CDX75604 | Canola | nucleus | 21.24 | 14.8 |
| CDY48107 | Canola | nucleus | 18.03 | 14.61 |
| CDY10473 | Canola | nucleus | 17.81 | 14.43 |
| CDY40327 | Canola | nucleus | 17.81 | 14.36 |
| CDY55113 | Canola | nucleus | 13.73 | 12.24 |
| CDX80798 | Canola | nucleus | 13.73 | 12.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.5 | GO:A0A078CJR0 | EnsemblPlants:CDX75313 | ProteinID:CDX75313 | ProteinID:CDX75313.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00121189001 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF05920 | PFAM:PF07526 | InterPro:POX_dom |
| PFscan:PS50071 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF92 | SMART:SM00389 | SMART:SM00574 | SUPFAM:SSF46689 |
| UniParc:UPI0004EE70DD | SEG:seg | : | : | : | : |
Description
BnaA01g03890D
Coordinates
chrLK031804:-:615926..617604
Molecular Weight (calculated)
53061.8 Da
IEP (calculated)
7.024
GRAVY (calculated)
-0.518
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNINTYSSL DNVITNQNHL LMDLIPSRED STSFPTMLPW NSIRQDPLQM GGFDIFNSFL TNKYLSSTSR STNVHETSFE AMAPPLPPPS LHPMEHLRPY
101: DDPSNNMWSL GENSEFHAYP FIEGVVGPSE PIISTFGEEG FPRNELSLSL ATDVSNESSE ISLCAATKST RITSEQASSS SKHVSKNVSQ VIFGSKYLHS
201: VQEILSHFAT YSLNGIETNP QCYFSSRGTE SEGTNSAFVS CYENLNEFLD GGSQRRALEA KKTHLLDLLQ MVDDRYSHCV DEIHTVVSAF HAAAELDPQL
301: HTRFALQTVS FLYKNLRERI SKKILMMGTV LERGKEKSQE DSIFHQHCLL QQLKRKNHQI WRPQRGLPEK SVSVLRTWMF QNFLHPYPKD SEKHLLAIRS
401: GLTRSQVSNW FINARVRLWK PMIEDMYAEM NKRKLSNTPL QGGNGGSFIR VPKSVMMSQE RDKIRE
101: DDPSNNMWSL GENSEFHAYP FIEGVVGPSE PIISTFGEEG FPRNELSLSL ATDVSNESSE ISLCAATKST RITSEQASSS SKHVSKNVSQ VIFGSKYLHS
201: VQEILSHFAT YSLNGIETNP QCYFSSRGTE SEGTNSAFVS CYENLNEFLD GGSQRRALEA KKTHLLDLLQ MVDDRYSHCV DEIHTVVSAF HAAAELDPQL
301: HTRFALQTVS FLYKNLRERI SKKILMMGTV LERGKEKSQE DSIFHQHCLL QQLKRKNHQI WRPQRGLPEK SVSVLRTWMF QNFLHPYPKD SEKHLLAIRS
401: GLTRSQVSNW FINARVRLWK PMIEDMYAEM NKRKLSNTPL QGGNGGSFIR VPKSVMMSQE RDKIRE
001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
Arabidopsis Description
ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.