Factsheet for Zm00001d016298_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015549_P001
Zm00001d027431_P002
Zm00001d046568_P001
Zm00001d048471_P001
Zm00001d053749_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	Zm00001d027431_P002	AT1G62990.1	15781858
AT4G32980.1	Zm00001d048471_P001	AT1G62990.1	15781858
AT4G32980.1	Zm00001d015549_P001	AT5G11060.1	15781858
AT4G32980.1	Zm00001d046568_P001	AT5G11060.1	15781858
AT4G32980.1	Zm00001d053749_P002	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002249_P001	Maize	nucleus	54.38	84.66
EES04785	Sorghum	nucleus	86.31	83.87
Os02t0226600-01	Rice	nucleus	57.85	58.81
CDX75307	Canola	nucleus	16.97	41.89
Zm00001d046223_P006	Maize	nucleus	36.86	41.14
Bra011403.1-P	Field mustard	nucleus	22.99	27.04
CDX75313	Canola	nucleus	22.99	27.04
Zm00001d033379_P001	Maize	nucleus	17.15	26.55
CDX68927	Canola	nucleus	22.26	26.46
CDY13511	Canola	nucleus	20.99	26.32
KRH52190	Soybean	nucleus	26.28	26.23
Bra037031.1-P	Field mustard	nucleus	20.8	26.09
PGSC0003DMT400076995	Potato	nucleus	25.36	25.74
AT4G32980.1	Thale cress	nucleus	22.08	25.58
KRH05496	Soybean	nucleus	26.64	25.57
VIT_04s0008g00880.t01	Wine grape	nucleus	27.01	25.13
CDX72383	Canola	nucleus	20.62	25.0
GSMUA_AchrUn_...	Banana	nucleus	27.01	24.96
GSMUA_Achr2P19430_001	Banana	nucleus	24.64	24.95
KRH61499	Soybean	nucleus	25.91	24.7
Solyc08g065420.2.1	Tomato	nucleus	25.0	24.51
CDX68925	Canola	cytosol	7.3	22.1
Zm00001d035907_P001	Maize	nucleus	16.42	18.07
Zm00001d027802_P002	Maize	nucleus	18.25	17.04
Zm00001d053151_P003	Maize	nucleus	20.07	16.39
Zm00001d033378_P003	Maize	nucleus	19.34	16.28
Zm00001d013547_P002	Maize	nucleus	18.98	16.28
Zm00001d031182_P002	Maize	nucleus	19.71	16.17
Zm00001d038355_P001	Maize	nucleus	16.61	15.8
Zm00001d010060_P001	Maize	nucleus	16.24	15.53
Zm00001d027435_P001	Maize	nucleus	17.34	15.32
CDX68906	Canola	nucleus	6.93	14.67
Zm00001d042864_P002	Maize	nucleus	15.69	14.65
Zm00001d029736_P001	Maize	nucleus, plastid	17.88	14.24
Zm00001d033898_P002	Maize	nucleus	19.53	14.17

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100273707	MapMan:15.5.3.5	UniProt:A0A1D6H6M1	ProteinID:AQK70437.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920
PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF119	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI0008436093	EnsemblPlantsGene:Zm00001d016298	EnsemblPlants:Zm00001d016298_P001	EnsemblPlants:Zm00001d016298_T001
SEG:seg	:	:	:	:	:

Description

Homeobox-transcription factor 2Homeobox protein ATH1

Coordinates

chr5:-:156109006..156112456

Molecular Weight (calculated)

57390.4 Da

IEP (calculated)

7.191

GRAVY (calculated)

-0.239

Length

548 amino acids

Sequence
(BLAST)

001: MASDPSTFSP IGVDAMGGGY FMAGSSSYGG GGIMSAEVPH FHHPGVLLDQ GGFGFGGLGN AAVVGGAATA ADLGAHYAAN NIVLASFASQ LLANAPAPPR
101: DDRAGGRTPP DEMDEELYGV AGCDSRVAAS LRCPSQSGAM AVWSSPSSSK KPYGIWTSAG GPAHEPYHLA AAGLSDAGGL RYPLAACSGG NASAAAASEL
201: SLTLCSNSIA SSDSALNATE QCSSGASRSA LTELPRARSR MALHFAAVVA RSRYAAVVQD LLNDVVGHML DGVADVTDDS CSGIGSVGAP SAVSSNRFMA
301: STEDAGARWG QAQRVRSNLL KTLQLMDEKY NQCLDEIQST TARFNTLMHS PPGGGGGGGG ICAPFAHRAV STMYRGLRRR LAGEIMAAAS RASCWGESSS
401: SVTVAAGGDV ERSWESAFIQ KHWSAQQLRR TEQQCWRPQR GLPEKSVAVL KAWMFENFLH PYPKDHEKDV LAARSGLTRN QAIIKIPPDS VSNWFINARV
501: RLWKPMIEEM YQDLKRSSGA GGGGHGPAME PQQHLSKRRI CELEDGGQ

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.